Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2948

Experiment: BHIS with Simvastatin 30 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Simvastatin 30 uM
3,709,817	+				+0.2
3,709,817	+				+0.1
3,709,990	-		BT2947	0.23	-0.9
3,710,591	+				-2.7
3,710,593	+				-0.6
3,710,617	+				-1.5
3,710,617	+				-1.5
3,710,618	-				-1.9
3,710,623	+				-3.1
3,710,624	-				-0.9
3,710,626	-				+1.3
3,710,632	+				+0.4
3,710,645	+				-1.5
3,710,646	-				-1.5
3,710,658	-				-1.0
3,710,721	-				-5.5
3,710,744	-				-2.2
3,710,745	+				+0.1
3,710,745	+				+0.1
3,710,746	-				-3.5
3,710,746	-				-3.1
3,710,754	+				+0.1
3,710,759	-				-1.5
3,710,804	+				-0.7
3,710,805	-				+0.8
3,710,858	-				-0.9
3,710,865	-				+0.1
3,710,906	+		BT2948	0.10	-2.1
3,710,907	-		BT2948	0.10	-0.9
3,710,907	-		BT2948	0.10	-0.7
3,710,908	+		BT2948	0.10	+0.1
3,710,908	+		BT2948	0.10	-0.9
3,710,920	-		BT2948	0.11	-0.9
3,710,920	-		BT2948	0.11	-1.5
3,710,971	+		BT2948	0.13	-2.7
3,710,971	+		BT2948	0.13	-0.4
3,710,976	-		BT2948	0.13	-3.8
3,710,985	-		BT2948	0.13	-0.9
3,710,989	+		BT2948	0.13	-2.2
3,710,990	-		BT2948	0.13	-2.5
3,710,990	-		BT2948	0.13	-4.2
3,710,990	-		BT2948	0.13	-2.5
3,710,992	-		BT2948	0.13	-3.2
3,711,031	+		BT2948	0.15	-0.9
3,711,031	+		BT2948	0.15	-0.9
3,711,032	-		BT2948	0.15	-3.4
3,711,032	-		BT2948	0.15	-0.9
3,711,036	-		BT2948	0.15	-1.5
3,711,037	+		BT2948	0.15	-3.2
3,711,037	+		BT2948	0.15	-2.2
3,711,038	-		BT2948	0.15	-2.5
3,711,074	-		BT2948	0.16	+0.1
3,711,078	-		BT2948	0.17	-1.5
3,711,090	+		BT2948	0.17	-2.5
3,711,091	-		BT2948	0.17	-2.8
3,711,101	+		BT2948	0.17	+0.1
3,711,174	-		BT2948	0.20	-0.5
3,711,186	-		BT2948	0.21	-0.9
3,711,188	-		BT2948	0.21	-0.3
3,711,193	+		BT2948	0.21	+0.2
3,711,210	-		BT2948	0.21	-3.9
3,711,222	+		BT2948	0.22	-3.9
3,711,235	+		BT2948	0.22	+0.1
3,711,236	-		BT2948	0.22	+0.1
3,711,329	+		BT2948	0.26	-2.5
3,711,329	+		BT2948	0.26	-1.9
3,711,397	+		BT2948	0.28	-3.8
3,711,433	+		BT2948	0.30	+0.1
3,711,438	-		BT2948	0.30	-0.9
3,711,447	+		BT2948	0.30	-1.1
3,711,447	+		BT2948	0.30	+0.1
3,711,447	+		BT2948	0.30	-1.5
3,711,448	-		BT2948	0.30	-0.9
3,711,452	-		BT2948	0.30	-1.5
3,711,466	+		BT2948	0.31	-1.1
3,711,577	+		BT2948	0.35	+0.6
3,711,578	-		BT2948	0.35	-0.8
3,711,602	+		BT2948	0.36	-0.9
3,711,626	+		BT2948	0.37	-0.9
3,711,671	-		BT2948	0.39	-1.1
3,711,757	+		BT2948	0.42	-0.5
3,711,762	-		BT2948	0.42	-0.9
3,711,762	-		BT2948	0.42	-3.6
3,711,780	-		BT2948	0.43	-0.9
3,711,789	-		BT2948	0.43	-0.2
3,711,789	-		BT2948	0.43	+0.1
3,711,792	+		BT2948	0.43	-1.5
3,711,865	-		BT2948	0.46	-4.2
3,711,900	-		BT2948	0.47	-1.9
3,711,939	+		BT2948	0.49	-3.6
3,711,972	-		BT2948	0.50	-2.5
3,712,022	+		BT2948	0.52	-0.5
3,712,049	+		BT2948	0.53	+0.1
3,712,050	-		BT2948	0.53	-2.0
3,712,083	-		BT2948	0.54	-2.7
3,712,083	-		BT2948	0.54	-2.4
3,712,084	+		BT2948	0.54	-2.7
3,712,084	+		BT2948	0.54	+0.7
3,712,085	-		BT2948	0.54	-2.4
3,712,085	-		BT2948	0.54	-1.5
3,712,151	+		BT2948	0.56	-2.2
3,712,202	-		BT2948	0.58	-0.9
3,712,205	-		BT2948	0.58	-1.9
3,712,216	-		BT2948	0.59	-2.6
3,712,222	+		BT2948	0.59	-2.6
3,712,222	+		BT2948	0.59	+0.1
3,712,259	+		BT2948	0.60	-1.2
3,712,268	-		BT2948	0.61	-1.5
3,712,277	+		BT2948	0.61	-1.5
3,712,316	+		BT2948	0.63	-2.2
3,712,317	-		BT2948	0.63	-2.2
3,712,317	-		BT2948	0.63	-0.9
3,712,318	+		BT2948	0.63	-2.7
3,712,319	-		BT2948	0.63	+0.1
3,712,320	+		BT2948	0.63	+0.1
3,712,321	-		BT2948	0.63	-0.9
3,712,345	-		BT2948	0.64	-1.9
3,712,350	+		BT2948	0.64	-1.6
3,712,351	-		BT2948	0.64	-2.1
3,712,355	+		BT2948	0.64	-2.1
3,712,356	-		BT2948	0.64	-1.0
3,712,356	-		BT2948	0.64	-4.4
3,712,515	-		BT2948	0.70	-0.0
3,712,516	+		BT2948	0.70	+0.1
3,712,516	+		BT2948	0.70	-2.5
3,712,598	+		BT2948	0.73	-2.0
3,712,608	-		BT2948	0.73	+0.4
3,712,751	+		BT2948	0.79	+1.3
3,712,766	+		BT2948	0.79	-1.1
3,712,767	-		BT2948	0.79	-3.4
3,712,774	-		BT2948	0.80	-3.2
3,712,774	-		BT2948	0.80	-0.9
3,712,779	+		BT2948	0.80	-0.9
3,712,784	-		BT2948	0.80	-1.5
3,712,854	+		BT2948	0.83	-2.9
3,712,862	-		BT2948	0.83	+0.1
3,712,910	+		BT2948	0.85	-1.6
3,712,910	+		BT2948	0.85	-0.9
3,712,911	-		BT2948	0.85	-2.5
3,712,928	+		BT2948	0.85	-1.5
3,712,929	-		BT2948	0.85	-0.6
3,712,929	-		BT2948	0.85	-0.9
3,712,972	-		BT2948	0.87	-3.1
3,712,987	+		BT2948	0.87	-0.3
3,712,987	+		BT2948	0.87	-2.2
3,713,028	-		BT2948	0.89	-1.9
3,713,045	+		BT2948	0.90	-0.9
3,713,045	+		BT2948	0.90	-3.4
3,713,054	-		BT2948	0.90	-0.9
3,713,060	-				-2.5
3,713,060	-				-0.9
3,713,106	-				-3.1
3,713,205	+				+0.9
3,713,233	+				-0.9
3,713,239	-				-1.1
3,713,327	+				-3.4
3,713,376	+				-4.7
3,713,376	+				-1.8
3,713,377	-				+0.1
3,713,377	-				+0.1
3,713,380	+				-1.3
3,713,380	+				-2.9
3,713,380	+				-3.9
3,713,382	+				-1.3
3,713,383	-				+0.1
3,713,396	-				-3.2
3,713,405	+				+0.4
3,713,477	+		BT2949	0.12	-1.5
3,713,543	-		BT2949	0.17	-2.5
3,713,543	-		BT2949	0.17	+0.4
3,713,547	+		BT2949	0.18	+0.1
3,713,547	+		BT2949	0.18	-2.5
3,713,547	+		BT2949	0.18	-1.0
3,713,548	-		BT2949	0.18	-3.1
3,713,548	-		BT2949	0.18	-2.4
3,713,548	-		BT2949	0.18	-0.8
3,713,621	-		BT2949	0.24	+0.1
3,713,623	-		BT2949	0.24	-0.2
3,713,650	+		BT2949	0.26	-0.2
3,713,733	+		BT2949	0.33	-1.9
3,713,733	+		BT2949	0.33	-3.2
3,713,733	+		BT2949	0.33	-0.7
3,713,734	-		BT2949	0.33	-1.2
3,713,752	+		BT2949	0.35	-0.9
3,713,753	-		BT2949	0.35	-2.2
3,713,856	+		BT2949	0.44	-0.5
3,713,856	+		BT2949	0.44	-1.0
3,713,987	-		BT2949	0.55	-3.2
3,714,060	+		BT2949	0.61	+1.6
3,714,060	+		BT2949	0.61	-0.6
3,714,061	-		BT2949	0.61	-3.2
3,714,061	-		BT2949	0.61	-3.8
3,714,137	+		BT2949	0.67	-2.9
3,714,147	+		BT2949	0.68	-1.2
3,714,158	-		BT2949	0.69	-2.9
3,714,180	+		BT2949	0.71	-0.3
3,714,255	+		BT2949	0.77	-1.6
3,714,259	+		BT2949	0.77	-0.9
3,714,260	-		BT2949	0.78	-2.9
3,714,321	+		BT2949	0.83	-1.1