Experiment: BHIS with Simvastatin 30 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0269 and BT0270 are separated by 13 nucleotides BT0270 and BT0271 are separated by 142 nucleotides BT0271 and BT0272 are separated by 23 nucleotides
BT0269: BT0269 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 307,218 to 308,756
BT0269
BT0270: BT0270 - hypothetical protein (NCBI ptt file), at 308,770 to 309,564
BT0270
BT0271: BT0271 - hypothetical protein (NCBI ptt file), at 309,707 to 310,582
BT0271
BT0272: BT0272 - TonB-dependent receptor for (+)-arabinogalactan (SusC-like) <small>(from data)</small>, at 310,606 to 313,776
BT0272
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.709 kb on - strand at 308.781 kb on - strand at 308.852 kb on - strand, within BT0270 at 308.852 kb on - strand, within BT0270 at 309.010 kb on - strand, within BT0270 at 309.037 kb on - strand, within BT0270 at 309.114 kb on - strand, within BT0270 at 309.206 kb on - strand, within BT0270 at 309.208 kb on - strand, within BT0270 at 309.313 kb on + strand, within BT0270 at 309.332 kb on + strand, within BT0270 at 309.333 kb on - strand, within BT0270 at 309.563 kb on - strand at 309.598 kb on - strand at 309.842 kb on - strand, within BT0271 at 309.842 kb on - strand, within BT0271 at 310.042 kb on + strand, within BT0271 at 310.086 kb on + strand, within BT0271 at 310.089 kb on - strand, within BT0271 at 310.129 kb on + strand, within BT0271 at 310.129 kb on + strand, within BT0271 at 310.257 kb on - strand, within BT0271 at 310.357 kb on - strand, within BT0271 at 310.409 kb on - strand, within BT0271 at 310.427 kb on - strand, within BT0271 at 310.432 kb on - strand, within BT0271 at 310.490 kb on - strand, within BT0271 at 310.536 kb on + strand at 310.537 kb on - strand at 310.581 kb on - strand at 310.621 kb on - strand at 310.621 kb on - strand at 310.725 kb on + strand at 311.179 kb on - strand, within BT0272 at 311.179 kb on - strand, within BT0272 at 311.371 kb on + strand, within BT0272
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Simvastatin 30 uM remove 308,709 - -2.7 308,781 - -0.5 308,852 - BT0270 0.10 -0.4 308,852 - BT0270 0.10 -1.7 309,010 - BT0270 0.30 -0.1 309,037 - BT0270 0.34 +0.2 309,114 - BT0270 0.43 +0.6 309,206 - BT0270 0.55 -2.6 309,208 - BT0270 0.55 -0.1 309,313 + BT0270 0.68 -1.7 309,332 + BT0270 0.71 +1.9 309,333 - BT0270 0.71 -3.7 309,563 - -3.5 309,598 - -0.6 309,842 - BT0271 0.15 -1.1 309,842 - BT0271 0.15 -1.8 310,042 + BT0271 0.38 -2.1 310,086 + BT0271 0.43 -0.1 310,089 - BT0271 0.44 +0.3 310,129 + BT0271 0.48 -0.1 310,129 + BT0271 0.48 -1.7 310,257 - BT0271 0.63 -1.7 310,357 - BT0271 0.74 -2.5 310,409 - BT0271 0.80 -0.1 310,427 - BT0271 0.82 +1.9 310,432 - BT0271 0.83 -1.1 310,490 - BT0271 0.89 +1.1 310,536 + -0.1 310,537 - -0.1 310,581 - +0.3 310,621 - -1.7 310,621 - -0.1 310,725 + -2.5 311,179 - BT0272 0.18 -1.4 311,179 - BT0272 0.18 -2.5 311,371 + BT0272 0.24 -1.7
Or see this region's nucleotide sequence