Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08890

Experiment: Betaine (C)(N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with TAPS; with chloride
1,969,660	+		PFLU_RS08885	0.31	+0.8
1,969,660	+		PFLU_RS08885	0.31	-1.4
1,969,660	+		PFLU_RS08885	0.31	-1.4
1,969,661	-		PFLU_RS08885	0.32	-0.3
1,969,661	-		PFLU_RS08885	0.32	+1.6
1,969,661	-		PFLU_RS08885	0.32	+0.3
1,970,047	+		PFLU_RS08885	0.74	-1.0
1,970,047	+		PFLU_RS08885	0.74	+3.3
1,970,047	+		PFLU_RS08885	0.74	-1.2
1,970,047	+		PFLU_RS08885	0.74	+2.8
1,970,047	+		PFLU_RS08885	0.74	+2.6
1,970,047	+		PFLU_RS08885	0.74	-1.0
1,970,047	+		PFLU_RS08885	0.74	-1.8
1,970,047	+		PFLU_RS08885	0.74	+0.2
1,970,047	+		PFLU_RS08885	0.74	-0.1
1,970,047	+		PFLU_RS08885	0.74	+2.4
1,970,047	+		PFLU_RS08885	0.74	-0.5
1,970,047	+		PFLU_RS08885	0.74	-2.1
1,970,047	+		PFLU_RS08885	0.74	+1.9
1,970,047	+		PFLU_RS08885	0.74	+1.1
1,970,047	+		PFLU_RS08885	0.74	-0.3
1,970,048	-		PFLU_RS08885	0.74	+1.5
1,970,048	-		PFLU_RS08885	0.74	+0.5
1,970,048	-		PFLU_RS08885	0.74	+1.5
1,970,048	-		PFLU_RS08885	0.74	-2.7
1,970,048	-		PFLU_RS08885	0.74	-0.5
1,970,048	-		PFLU_RS08885	0.74	+2.1
1,970,048	-		PFLU_RS08885	0.74	-2.4
1,970,048	-		PFLU_RS08885	0.74	+1.0
1,970,048	-		PFLU_RS08885	0.74	-1.1
1,970,048	-		PFLU_RS08885	0.74	-0.3
1,970,048	-		PFLU_RS08885	0.74	-0.1
1,970,048	-		PFLU_RS08885	0.74	+1.6
1,970,218	-				+1.4
1,970,218	-				+0.0
1,970,302	-				-2.0
1,970,302	-				-1.3
1,970,342	+				-0.3
1,970,371	+				-0.1
1,970,371	+				+0.5
1,970,371	+				-2.5
1,970,371	+				+1.4
1,970,371	+				-2.7
1,970,371	+				-0.8
1,970,371	+				-2.4
1,970,371	+				-0.4
1,970,371	+				+1.5
1,970,371	+				-2.1
1,970,372	-				-0.8
1,970,372	-				+2.3
1,970,372	-				-0.7
1,970,375	+				-1.3
1,970,375	+				-0.6
1,970,375	+				+0.4
1,970,375	+				+0.3
1,970,375	+				-0.7
1,970,375	+				+0.9
1,970,375	+				+1.5
1,970,375	+				-0.6
1,970,375	+				-0.3
1,970,375	+				+0.9
1,970,375	+				+3.2
1,970,375	+				+2.8
1,970,375	+				-1.3
1,970,376	-				+2.5
1,970,376	-				+1.2
1,970,376	-				-1.5
1,970,376	-				-1.5
1,970,376	-				+0.2
1,970,376	-				+0.5
1,970,376	-				-1.0
1,970,376	-				+0.5
1,970,376	-				-2.5
1,970,376	-				-1.3
1,970,376	-				+0.3
1,970,376	-				+0.3
1,970,376	-				-0.6
1,970,376	-				-0.8
1,970,376	-				-1.6
1,970,404	+				-1.3
1,970,405	-				-1.6
1,970,474	+				-0.1
1,970,474	+				-1.5
1,970,475	-				-0.0
1,970,475	-				+1.7
1,970,481	-				-1.2
1,970,547	+		PFLU_RS08890	0.21	+0.4
1,970,548	-		PFLU_RS08890	0.22	+1.9
1,970,548	-		PFLU_RS08890	0.22	+2.3
1,970,549	+		PFLU_RS08890	0.22	-2.4
1,970,549	+		PFLU_RS08890	0.22	+0.6
1,970,550	-		PFLU_RS08890	0.22	-1.3
1,970,550	-		PFLU_RS08890	0.22	+2.8
1,970,550	-		PFLU_RS08890	0.22	+2.8
1,970,603	-		PFLU_RS08890	0.34	-2.0
1,970,671	+		PFLU_RS08890	0.50	+3.2
1,970,671	+		PFLU_RS08890	0.50	-2.0
1,970,672	-		PFLU_RS08890	0.50	-1.7
1,970,672	-		PFLU_RS08890	0.50	-0.1
1,970,700	+		PFLU_RS08890	0.57	+2.2
1,970,700	+		PFLU_RS08890	0.57	-1.3
1,970,701	-		PFLU_RS08890	0.57	-1.5
1,970,701	-		PFLU_RS08890	0.57	+1.1
1,970,701	-		PFLU_RS08890	0.57	-0.1
1,970,701	-		PFLU_RS08890	0.57	+2.3
1,970,705	-		PFLU_RS08890	0.58	-1.8
1,970,718	+		PFLU_RS08890	0.61	+3.0
1,970,735	+		PFLU_RS08890	0.65	+0.5
1,970,735	+		PFLU_RS08890	0.65	+1.8
1,970,735	+		PFLU_RS08890	0.65	-0.3
1,970,736	-		PFLU_RS08890	0.65	+0.2
1,970,764	+		PFLU_RS08890	0.72	+1.8
1,970,764	+		PFLU_RS08890	0.72	-1.3
1,970,764	+		PFLU_RS08890	0.72	+1.4
1,970,764	+		PFLU_RS08890	0.72	-0.5
1,970,765	-		PFLU_RS08890	0.72	+2.6
1,970,765	-		PFLU_RS08890	0.72	+1.8
1,970,777	+		PFLU_RS08890	0.75	+0.2
1,970,777	+		PFLU_RS08890	0.75	-3.3
1,970,777	+		PFLU_RS08890	0.75	+0.3
1,970,777	+		PFLU_RS08890	0.75	-0.5
1,970,778	-		PFLU_RS08890	0.75	-1.5
1,970,778	-		PFLU_RS08890	0.75	-0.8
1,970,875	-				-1.3
1,970,875	-				+0.2
1,970,875	-				-0.1
1,970,886	+				-0.5
1,970,886	+				+1.2
1,970,886	+				+0.9
1,970,886	+				-0.8
1,970,886	+				-1.8
1,970,887	-				+0.0
1,970,887	-				-1.5
1,970,888	+				-1.0
1,970,888	+				+1.3
1,970,888	+				+0.9
1,970,888	+				-1.7
1,970,889	-				-2.0
1,970,889	-				-1.0
1,970,889	-				+2.5
1,970,931	-				+0.7
1,971,022	+				-1.5
1,971,036	+				+1.9
1,971,037	-				-2.5
1,971,037	-				-1.1
1,971,041	+				+0.3
1,971,041	+				-0.8
1,971,041	+				+1.3
1,971,042	-				-2.0
1,971,078	+				-1.7
1,971,079	-				+0.9
1,971,079	-				-1.6
1,971,079	-				-0.3
1,971,181	+				-0.4
1,971,183	+				+0.4
1,971,183	+				+1.4
1,971,183	+				+2.9
1,971,183	+				+0.6
1,971,183	+				-0.7
1,971,183	+				+1.8
1,971,184	-				-0.3
1,971,184	-				-0.8
1,971,184	-				+0.9
1,971,184	-				+3.1
1,971,184	-				-0.1
1,971,184	-				+1.6
1,971,189	+				+0.6
1,971,189	+				+2.1
1,971,189	+				+1.3
1,971,190	-				+0.2
1,971,204	+				+1.3
1,971,342	+		PFLU_RS08895	0.24	-1.8
1,971,342	+		PFLU_RS08895	0.24	-2.3
1,971,342	+		PFLU_RS08895	0.24	+4.1
1,971,342	+		PFLU_RS08895	0.24	+3.2
1,971,343	-		PFLU_RS08895	0.25	+3.5
1,971,343	-		PFLU_RS08895	0.25	-1.9
1,971,405	+		PFLU_RS08895	0.32	-0.3
1,971,406	-		PFLU_RS08895	0.33	-0.8
1,971,406	-		PFLU_RS08895	0.33	-0.8
1,971,426	+		PFLU_RS08895	0.35	+1.7
1,971,427	-		PFLU_RS08895	0.35	-1.2
1,971,434	+		PFLU_RS08895	0.36	+0.4
1,971,435	-		PFLU_RS08895	0.36	-1.3
1,971,435	-		PFLU_RS08895	0.36	+1.8
1,971,654	+		PFLU_RS08895	0.64	-1.0
1,971,654	+		PFLU_RS08895	0.64	-0.3
1,971,654	+		PFLU_RS08895	0.64	-2.7
1,971,654	+		PFLU_RS08895	0.64	-2.5
1,971,654	+		PFLU_RS08895	0.64	-1.1
1,971,654	+		PFLU_RS08895	0.64	-0.7
1,971,654	+		PFLU_RS08895	0.64	+2.1
1,971,654	+		PFLU_RS08895	0.64	+3.5
1,971,654	+		PFLU_RS08895	0.64	+0.6
1,971,654	+		PFLU_RS08895	0.64	-2.0
1,971,654	+		PFLU_RS08895	0.64	-1.2
1,971,654	+		PFLU_RS08895	0.64	+0.8
1,971,654	+		PFLU_RS08895	0.64	-0.1
1,971,654	+		PFLU_RS08895	0.64	-1.0
1,971,654	+		PFLU_RS08895	0.64	+1.9
1,971,654	+		PFLU_RS08895	0.64	-1.6
1,971,654	+		PFLU_RS08895	0.64	+3.9
1,971,654	+		PFLU_RS08895	0.64	-1.2
1,971,654	+		PFLU_RS08895	0.64	+2.6
1,971,654	+		PFLU_RS08895	0.64	+0.2
1,971,654	+		PFLU_RS08895	0.64	+1.7
1,971,654	+		PFLU_RS08895	0.64	+2.0
1,971,654	+		PFLU_RS08895	0.64	+0.2
1,971,654	+		PFLU_RS08895	0.64	-0.5
1,971,655	-		PFLU_RS08895	0.64	+0.8
1,971,655	-		PFLU_RS08895	0.64	-0.3
1,971,655	-		PFLU_RS08895	0.64	-0.1
1,971,655	-		PFLU_RS08895	0.64	+1.2
1,971,655	-		PFLU_RS08895	0.64	+0.9
1,971,655	-		PFLU_RS08895	0.64	-1.1
1,971,655	-		PFLU_RS08895	0.64	+1.9
1,971,655	-		PFLU_RS08895	0.64	-1.2
1,971,655	-		PFLU_RS08895	0.64	-1.2
1,971,655	-		PFLU_RS08895	0.64	+0.6
1,971,655	-		PFLU_RS08895	0.64	-0.8
1,971,655	-		PFLU_RS08895	0.64	-0.5
1,971,655	-		PFLU_RS08895	0.64	+0.5
1,971,655	-		PFLU_RS08895	0.64	+3.9
1,971,655	-		PFLU_RS08895	0.64	-2.9
1,971,655	-		PFLU_RS08895	0.64	+1.3
1,971,655	-		PFLU_RS08895	0.64	-0.6
1,971,655	-		PFLU_RS08895	0.64	-1.7
1,971,655	-		PFLU_RS08895	0.64	-0.8
1,971,655	-		PFLU_RS08895	0.64	+1.3
1,971,655	-		PFLU_RS08895	0.64	+2.3
1,971,655	-		PFLU_RS08895	0.64	+3.4
1,971,655	-		PFLU_RS08895	0.64	-1.0
1,971,655	-		PFLU_RS08895	0.64	+0.1
1,971,655	-		PFLU_RS08895	0.64	+1.4
1,971,655	-		PFLU_RS08895	0.64	+1.6
1,971,660	+		PFLU_RS08895	0.65	+0.4
1,971,660	+		PFLU_RS08895	0.65	+3.0
1,971,661	-		PFLU_RS08895	0.65	-0.7
1,971,702	+		PFLU_RS08895	0.70	+1.5
1,971,714	+		PFLU_RS08895	0.72	+1.1
1,971,714	+		PFLU_RS08895	0.72	+2.7
1,971,714	+		PFLU_RS08895	0.72	-2.9
1,971,715	-		PFLU_RS08895	0.72	+0.1
1,971,715	-		PFLU_RS08895	0.72	+2.8
1,971,715	-		PFLU_RS08895	0.72	+2.7
1,971,715	-		PFLU_RS08895	0.72	-0.3
1,971,715	-		PFLU_RS08895	0.72	-3.2
1,971,747	+		PFLU_RS08895	0.76	-0.7
1,971,747	+		PFLU_RS08895	0.76	+0.5
1,971,748	-		PFLU_RS08895	0.76	-1.8
1,971,748	-		PFLU_RS08895	0.76	+0.5
1,971,817	+		PFLU_RS08895	0.85	+1.1
1,971,817	+		PFLU_RS08895	0.85	-1.1
1,971,817	+		PFLU_RS08895	0.85	-1.8
1,971,817	+		PFLU_RS08895	0.85	+1.1
1,971,818	-		PFLU_RS08895	0.85	-2.0
1,971,818	-		PFLU_RS08895	0.85	-2.4
1,971,818	-		PFLU_RS08895	0.85	-2.2
1,971,818	-		PFLU_RS08895	0.85	-0.7