Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25460 and BWI76_RS25465 overlap by 4 nucleotides BWI76_RS25465 and BWI76_RS25470 are separated by 58 nucleotides BWI76_RS25470 and BWI76_RS25475 are separated by 88 nucleotides
BWI76_RS25460: BWI76_RS25460 - transcriptional regulator, at 5,289,757 to 5,290,686
_RS25460
BWI76_RS25465: BWI76_RS25465 - transcriptional regulator, at 5,290,683 to 5,291,429
_RS25465
BWI76_RS25470: BWI76_RS25470 - metalloprotease TldD, at 5,291,488 to 5,292,933
_RS25470
BWI76_RS25475: BWI76_RS25475 - TIGR02099 family protein, at 5,293,022 to 5,296,819
_RS25475
Position (kb) 5291
5292
5293 Strain fitness (log2 ratio) -2
-1
0
1 at 5290.603 kb on - strand at 5290.656 kb on + strand at 5290.697 kb on - strand at 5290.834 kb on + strand at 5290.966 kb on + strand, within BWI76_RS25465 at 5290.974 kb on - strand, within BWI76_RS25465 at 5290.995 kb on + strand, within BWI76_RS25465 at 5291.042 kb on + strand, within BWI76_RS25465 at 5291.283 kb on - strand, within BWI76_RS25465 at 5291.290 kb on - strand, within BWI76_RS25465 at 5291.348 kb on - strand, within BWI76_RS25465 at 5291.485 kb on + strand at 5291.656 kb on + strand, within BWI76_RS25470 at 5291.663 kb on - strand, within BWI76_RS25470 at 5291.819 kb on - strand, within BWI76_RS25470 at 5291.843 kb on + strand, within BWI76_RS25470 at 5291.918 kb on + strand, within BWI76_RS25470 at 5292.057 kb on + strand, within BWI76_RS25470 at 5292.057 kb on + strand, within BWI76_RS25470 at 5292.065 kb on - strand, within BWI76_RS25470 at 5292.065 kb on - strand, within BWI76_RS25470 at 5292.159 kb on + strand, within BWI76_RS25470 at 5292.159 kb on + strand, within BWI76_RS25470 at 5292.511 kb on - strand, within BWI76_RS25470 at 5292.612 kb on - strand, within BWI76_RS25470 at 5292.671 kb on - strand, within BWI76_RS25470 at 5293.227 kb on + strand at 5293.272 kb on - strand at 5293.291 kb on + strand at 5293.434 kb on - strand, within BWI76_RS25475 at 5293.557 kb on - strand, within BWI76_RS25475 at 5293.562 kb on - strand, within BWI76_RS25475
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM remove 5,290,603 - -0.5 5,290,656 + +1.7 5,290,697 - -2.2 5,290,834 + -0.8 5,290,966 + BWI76_RS25465 0.38 -1.8 5,290,974 - BWI76_RS25465 0.39 -0.3 5,290,995 + BWI76_RS25465 0.42 +0.3 5,291,042 + BWI76_RS25465 0.48 -0.5 5,291,283 - BWI76_RS25465 0.80 -0.6 5,291,290 - BWI76_RS25465 0.81 -0.2 5,291,348 - BWI76_RS25465 0.89 -0.6 5,291,485 + -0.9 5,291,656 + BWI76_RS25470 0.12 -0.1 5,291,663 - BWI76_RS25470 0.12 -1.0 5,291,819 - BWI76_RS25470 0.23 +1.0 5,291,843 + BWI76_RS25470 0.25 -0.4 5,291,918 + BWI76_RS25470 0.30 -0.5 5,292,057 + BWI76_RS25470 0.39 -1.4 5,292,057 + BWI76_RS25470 0.39 -0.2 5,292,065 - BWI76_RS25470 0.40 +0.5 5,292,065 - BWI76_RS25470 0.40 -1.8 5,292,159 + BWI76_RS25470 0.46 -0.3 5,292,159 + BWI76_RS25470 0.46 +0.6 5,292,511 - BWI76_RS25470 0.71 -1.9 5,292,612 - BWI76_RS25470 0.78 -0.4 5,292,671 - BWI76_RS25470 0.82 -1.5 5,293,227 + +0.1 5,293,272 - +0.3 5,293,291 + +0.5 5,293,434 - BWI76_RS25475 0.11 +0.4 5,293,557 - BWI76_RS25475 0.14 +0.0 5,293,562 - BWI76_RS25475 0.14 -0.4
Or see this region's nucleotide sequence