Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28335 and BPHYT_RS28340 overlap by 20 nucleotides BPHYT_RS28340 and BPHYT_RS28345 are separated by 49 nucleotides BPHYT_RS28345 and BPHYT_RS28350 are separated by 152 nucleotides
BPHYT_RS28335: BPHYT_RS28335 - hypothetical protein, at 1,909,698 to 1,910,651
_RS28335
BPHYT_RS28340: BPHYT_RS28340 - indole acetimide hydrolase, at 1,910,632 to 1,912,086
_RS28340
BPHYT_RS28345: BPHYT_RS28345 - CDP-diacylglycerol diphosphatase, at 1,912,136 to 1,912,924
_RS28345
BPHYT_RS28350: BPHYT_RS28350 - fatty acid desaturase, at 1,913,077 to 1,914,024
_RS28350
Position (kb) 1910
1911
1912
1913 Strain fitness (log2 ratio) -1
0
1
2
3 at 1909.688 kb on + strand at 1909.836 kb on + strand, within BPHYT_RS28335 at 1909.956 kb on - strand, within BPHYT_RS28335 at 1910.091 kb on + strand, within BPHYT_RS28335 at 1910.137 kb on - strand, within BPHYT_RS28335 at 1910.137 kb on - strand, within BPHYT_RS28335 at 1910.139 kb on - strand, within BPHYT_RS28335 at 1911.013 kb on - strand, within BPHYT_RS28340 at 1911.259 kb on + strand, within BPHYT_RS28340 at 1911.294 kb on + strand, within BPHYT_RS28340 at 1911.356 kb on + strand, within BPHYT_RS28340 at 1911.357 kb on - strand, within BPHYT_RS28340 at 1912.147 kb on - strand at 1912.493 kb on + strand, within BPHYT_RS28345 at 1912.493 kb on + strand, within BPHYT_RS28345 at 1912.836 kb on + strand, within BPHYT_RS28345 at 1912.836 kb on + strand, within BPHYT_RS28345 at 1912.837 kb on - strand, within BPHYT_RS28345
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 1,909,688 + +1.1 1,909,836 + BPHYT_RS28335 0.14 +1.3 1,909,956 - BPHYT_RS28335 0.27 +0.1 1,910,091 + BPHYT_RS28335 0.41 -0.2 1,910,137 - BPHYT_RS28335 0.46 +0.9 1,910,137 - BPHYT_RS28335 0.46 -0.0 1,910,139 - BPHYT_RS28335 0.46 -0.9 1,911,013 - BPHYT_RS28340 0.26 +0.5 1,911,259 + BPHYT_RS28340 0.43 +1.3 1,911,294 + BPHYT_RS28340 0.45 +0.3 1,911,356 + BPHYT_RS28340 0.50 +0.3 1,911,357 - BPHYT_RS28340 0.50 +2.9 1,912,147 - +1.5 1,912,493 + BPHYT_RS28345 0.45 +0.6 1,912,493 + BPHYT_RS28345 0.45 -0.7 1,912,836 + BPHYT_RS28345 0.89 +0.2 1,912,836 + BPHYT_RS28345 0.89 -1.7 1,912,837 - BPHYT_RS28345 0.89 -0.3
Or see this region's nucleotide sequence