Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21280 and BPHYT_RS21285 are separated by 323 nucleotides BPHYT_RS21285 and BPHYT_RS21290 are separated by 126 nucleotides BPHYT_RS21290 and BPHYT_RS21295 are separated by 143 nucleotides
BPHYT_RS21280: BPHYT_RS21280 - hypothetical protein, at 335,224 to 335,676
_RS21280
BPHYT_RS21285: BPHYT_RS21285 - hypothetical protein, at 336,000 to 336,233
_RS21285
BPHYT_RS21290: BPHYT_RS21290 - serine acetyltransferase, at 336,360 to 337,286
_RS21290
BPHYT_RS21295: BPHYT_RS21295 - AraC family transcriptional regulator, at 337,430 to 338,251
_RS21295
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 335.536 kb on + strand, within BPHYT_RS21280 at 335.803 kb on + strand at 335.871 kb on - strand at 336.040 kb on + strand, within BPHYT_RS21285 at 336.084 kb on + strand, within BPHYT_RS21285 at 336.084 kb on + strand, within BPHYT_RS21285 at 336.085 kb on - strand, within BPHYT_RS21285 at 336.574 kb on - strand, within BPHYT_RS21290 at 337.029 kb on + strand, within BPHYT_RS21290 at 337.029 kb on + strand at 337.135 kb on - strand, within BPHYT_RS21290 at 337.402 kb on - strand at 337.685 kb on + strand, within BPHYT_RS21295 at 338.084 kb on + strand, within BPHYT_RS21295 at 338.084 kb on + strand, within BPHYT_RS21295 at 338.085 kb on - strand, within BPHYT_RS21295 at 338.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 335,536 + BPHYT_RS21280 0.69 -1.5 335,803 + -0.9 335,871 - -0.1 336,040 + BPHYT_RS21285 0.17 -3.0 336,084 + BPHYT_RS21285 0.36 +0.1 336,084 + BPHYT_RS21285 0.36 -0.5 336,085 - BPHYT_RS21285 0.36 +0.0 336,574 - BPHYT_RS21290 0.23 -0.1 337,029 + BPHYT_RS21290 0.72 +0.7 337,029 + -0.9 337,135 - BPHYT_RS21290 0.84 +0.8 337,402 - -1.4 337,685 + BPHYT_RS21295 0.31 -1.1 338,084 + BPHYT_RS21295 0.80 -0.3 338,084 + BPHYT_RS21295 0.80 -0.3 338,085 - BPHYT_RS21295 0.80 -0.1 338,232 - +0.5
Or see this region's nucleotide sequence