Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04620 and BPHYT_RS04625 are separated by 32 nucleotides BPHYT_RS04625 and BPHYT_RS04630 overlap by 4 nucleotides BPHYT_RS04630 and BPHYT_RS04635 are separated by 1 nucleotides
BPHYT_RS04620: BPHYT_RS04620 - urea ABC transporter ATP-binding protein, at 1,069,875 to 1,070,567
_RS04620
BPHYT_RS04625: BPHYT_RS04625 - urea ABC transporter ATP-binding protein, at 1,070,600 to 1,071,466
_RS04625
BPHYT_RS04630: BPHYT_RS04630 - amino acid ABC transporter permease, at 1,071,463 to 1,072,647
_RS04630
BPHYT_RS04635: BPHYT_RS04635 - urea ABC transporter permease, at 1,072,649 to 1,074,220
_RS04635
Position (kb) 1071
1072
1073 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1070.540 kb on - strand at 1070.540 kb on - strand at 1070.562 kb on + strand at 1070.562 kb on + strand at 1070.614 kb on - strand at 1071.163 kb on - strand, within BPHYT_RS04625 at 1071.331 kb on - strand, within BPHYT_RS04625 at 1071.569 kb on + strand at 1071.737 kb on + strand, within BPHYT_RS04630 at 1071.810 kb on - strand, within BPHYT_RS04630 at 1072.286 kb on + strand, within BPHYT_RS04630 at 1072.608 kb on + strand at 1072.866 kb on + strand, within BPHYT_RS04635 at 1072.866 kb on + strand, within BPHYT_RS04635 at 1072.867 kb on - strand, within BPHYT_RS04635 at 1072.867 kb on - strand, within BPHYT_RS04635 at 1072.867 kb on - strand, within BPHYT_RS04635 at 1072.867 kb on - strand, within BPHYT_RS04635 at 1072.957 kb on - strand, within BPHYT_RS04635 at 1073.113 kb on - strand, within BPHYT_RS04635 at 1073.135 kb on + strand, within BPHYT_RS04635 at 1073.403 kb on + strand, within BPHYT_RS04635 at 1073.403 kb on + strand, within BPHYT_RS04635 at 1073.403 kb on + strand, within BPHYT_RS04635
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 1,070,540 - -1.6 1,070,540 - +0.3 1,070,562 + -0.6 1,070,562 + +0.4 1,070,614 - -0.7 1,071,163 - BPHYT_RS04625 0.65 +1.0 1,071,331 - BPHYT_RS04625 0.84 -1.0 1,071,569 + -0.0 1,071,737 + BPHYT_RS04630 0.23 -1.8 1,071,810 - BPHYT_RS04630 0.29 -0.1 1,072,286 + BPHYT_RS04630 0.69 -1.0 1,072,608 + -0.3 1,072,866 + BPHYT_RS04635 0.14 -3.2 1,072,866 + BPHYT_RS04635 0.14 +0.3 1,072,867 - BPHYT_RS04635 0.14 +0.2 1,072,867 - BPHYT_RS04635 0.14 +0.9 1,072,867 - BPHYT_RS04635 0.14 +2.6 1,072,867 - BPHYT_RS04635 0.14 -0.8 1,072,957 - BPHYT_RS04635 0.20 -0.9 1,073,113 - BPHYT_RS04635 0.30 -1.5 1,073,135 + BPHYT_RS04635 0.31 -1.0 1,073,403 + BPHYT_RS04635 0.48 +1.0 1,073,403 + BPHYT_RS04635 0.48 +0.1 1,073,403 + BPHYT_RS04635 0.48 -0.1
Or see this region's nucleotide sequence