Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04040 and BPHYT_RS04045 are separated by 281 nucleotides BPHYT_RS04045 and BPHYT_RS04050 are separated by 117 nucleotides
BPHYT_RS04040: BPHYT_RS04040 - hypothetical protein, at 920,671 to 922,146
_RS04040
BPHYT_RS04045: BPHYT_RS04045 - acyltransferase, at 922,428 to 923,582
_RS04045
BPHYT_RS04050: BPHYT_RS04050 - group 1 glycosyl transferase, at 923,700 to 924,905
_RS04050
Position (kb) 922
923
924 Strain fitness (log2 ratio) -2
-1
0
1 at 921.468 kb on + strand, within BPHYT_RS04040 at 922.086 kb on - strand at 922.118 kb on - strand at 922.295 kb on + strand at 922.435 kb on + strand at 922.541 kb on + strand at 922.551 kb on + strand, within BPHYT_RS04045 at 922.551 kb on + strand, within BPHYT_RS04045 at 922.729 kb on - strand, within BPHYT_RS04045 at 922.732 kb on - strand, within BPHYT_RS04045 at 922.816 kb on - strand, within BPHYT_RS04045 at 923.073 kb on + strand, within BPHYT_RS04045 at 923.457 kb on + strand, within BPHYT_RS04045 at 923.744 kb on + strand at 923.744 kb on + strand at 923.979 kb on - strand, within BPHYT_RS04050 at 923.979 kb on - strand, within BPHYT_RS04050 at 924.179 kb on - strand, within BPHYT_RS04050 at 924.179 kb on - strand, within BPHYT_RS04050 at 924.550 kb on + strand, within BPHYT_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 921,468 + BPHYT_RS04040 0.54 -1.1 922,086 - -0.8 922,118 - +1.3 922,295 + -0.1 922,435 + +0.4 922,541 + -0.5 922,551 + BPHYT_RS04045 0.11 +0.4 922,551 + BPHYT_RS04045 0.11 +1.4 922,729 - BPHYT_RS04045 0.26 +0.9 922,732 - BPHYT_RS04045 0.26 -0.9 922,816 - BPHYT_RS04045 0.34 +0.3 923,073 + BPHYT_RS04045 0.56 +0.7 923,457 + BPHYT_RS04045 0.89 +1.1 923,744 + -0.7 923,744 + -2.7 923,979 - BPHYT_RS04050 0.23 +0.1 923,979 - BPHYT_RS04050 0.23 +0.9 924,179 - BPHYT_RS04050 0.40 +1.3 924,179 - BPHYT_RS04050 0.40 +0.3 924,550 + BPHYT_RS04050 0.70 -0.2
Or see this region's nucleotide sequence