Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04015 and BPHYT_RS04020 are separated by 31 nucleotides BPHYT_RS04020 and BPHYT_RS04025 are separated by 185 nucleotides BPHYT_RS04025 and BPHYT_RS04030 are separated by 220 nucleotides
BPHYT_RS04015: BPHYT_RS04015 - glycosyl transferase, at 914,682 to 916,034
_RS04015
BPHYT_RS04020: BPHYT_RS04020 - hypothetical protein, at 916,066 to 916,572
_RS04020
BPHYT_RS04025: BPHYT_RS04025 - hypothetical protein, at 916,758 to 917,378
_RS04025
BPHYT_RS04030: BPHYT_RS04030 - oxidoreductase, at 917,599 to 919,338
_RS04030
Position (kb) 916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 916.104 kb on - strand at 916.116 kb on - strand at 916.697 kb on + strand at 916.698 kb on - strand at 916.723 kb on + strand at 917.616 kb on + strand at 917.682 kb on + strand at 917.957 kb on - strand, within BPHYT_RS04030 at 918.374 kb on - strand, within BPHYT_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 916,104 - -1.8 916,116 - +0.2 916,697 + +0.5 916,698 - -0.9 916,723 + +0.6 917,616 + -0.4 917,682 + +0.4 917,957 - BPHYT_RS04030 0.21 +0.6 918,374 - BPHYT_RS04030 0.45 -3.6
Or see this region's nucleotide sequence