Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01225 and BPHYT_RS01230 are separated by 272 nucleotides BPHYT_RS01230 and BPHYT_RS01235 are separated by 461 nucleotides BPHYT_RS01235 and BPHYT_RS01240 are separated by 196 nucleotides
BPHYT_RS01225: BPHYT_RS01225 - hypothetical protein, at 282,860 to 283,738
_RS01225
BPHYT_RS01230: BPHYT_RS01230 - DNA-binding protein, at 284,011 to 284,307
_RS01230
BPHYT_RS01235: BPHYT_RS01235 - hypothetical protein, at 284,769 to 285,008
_RS01235
BPHYT_RS01240: BPHYT_RS01240 - hypothetical protein, at 285,205 to 285,423
_RS01240
Position (kb) 284
285 Strain fitness (log2 ratio) -1
0
1 at 283.102 kb on + strand, within BPHYT_RS01225 at 283.102 kb on + strand, within BPHYT_RS01225 at 283.466 kb on + strand, within BPHYT_RS01225 at 283.494 kb on - strand, within BPHYT_RS01225 at 283.530 kb on + strand, within BPHYT_RS01225 at 283.531 kb on - strand, within BPHYT_RS01225 at 283.531 kb on - strand, within BPHYT_RS01225 at 283.649 kb on - strand, within BPHYT_RS01225 at 283.663 kb on - strand at 283.752 kb on + strand at 283.752 kb on + strand at 283.919 kb on - strand at 284.123 kb on - strand, within BPHYT_RS01230 at 284.189 kb on + strand, within BPHYT_RS01230 at 284.190 kb on - strand, within BPHYT_RS01230 at 284.227 kb on - strand, within BPHYT_RS01230 at 284.368 kb on + strand at 284.369 kb on - strand at 284.434 kb on + strand at 284.808 kb on + strand, within BPHYT_RS01235 at 284.809 kb on - strand, within BPHYT_RS01235 at 285.304 kb on - strand, within BPHYT_RS01240
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 283,102 + BPHYT_RS01225 0.28 +0.6 283,102 + BPHYT_RS01225 0.28 +0.3 283,466 + BPHYT_RS01225 0.69 +0.1 283,494 - BPHYT_RS01225 0.72 -0.0 283,530 + BPHYT_RS01225 0.76 -0.1 283,531 - BPHYT_RS01225 0.76 -0.1 283,531 - BPHYT_RS01225 0.76 +1.0 283,649 - BPHYT_RS01225 0.90 +0.1 283,663 - +0.1 283,752 + -1.6 283,752 + -0.1 283,919 - +0.5 284,123 - BPHYT_RS01230 0.38 +1.1 284,189 + BPHYT_RS01230 0.60 +0.7 284,190 - BPHYT_RS01230 0.60 -0.5 284,227 - BPHYT_RS01230 0.73 -1.6 284,368 + +0.4 284,369 - -1.1 284,434 + +0.2 284,808 + BPHYT_RS01235 0.16 -0.3 284,809 - BPHYT_RS01235 0.17 -1.5 285,304 - BPHYT_RS01240 0.45 +0.2
Or see this region's nucleotide sequence