Experiment: Aerobic, no iron sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4349 and Psest_4350 are separated by 2 nucleotides Psest_4350 and Psest_4352 are separated by 293 nucleotides
Psest_4349: Psest_4349 - glucosamine--fructose-6-phosphate aminotransferase (isomerizing), at 4,549,153 to 4,551,003
_4349
Psest_4350: Psest_4350 - Transcriptional regulators of sugar metabolism, at 4,551,006 to 4,551,788
_4350
Psest_4352: Psest_4352 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase, at 4,552,082 to 4,553,440
_4352
Position (kb)
4551
4552 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4551.226 kb on - strand, within Psest_4350 at 4551.226 kb on - strand, within Psest_4350 at 4551.226 kb on - strand, within Psest_4350 at 4551.243 kb on - strand, within Psest_4350 at 4551.560 kb on - strand, within Psest_4350 at 4551.560 kb on - strand, within Psest_4350 at 4551.560 kb on - strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.576 kb on + strand, within Psest_4350 at 4551.577 kb on - strand, within Psest_4350 at 4551.577 kb on - strand, within Psest_4350 at 4551.577 kb on - strand, within Psest_4350 at 4551.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic, no iron sample2 remove 4,551,226 - Psest_4350 0.28 -0.2 4,551,226 - Psest_4350 0.28 -0.8 4,551,226 - Psest_4350 0.28 -1.6 4,551,243 - Psest_4350 0.30 -1.5 4,551,560 - Psest_4350 0.71 +0.1 4,551,560 - Psest_4350 0.71 -0.0 4,551,560 - Psest_4350 0.71 +0.5 4,551,576 + Psest_4350 0.73 -2.5 4,551,576 + Psest_4350 0.73 -2.8 4,551,576 + Psest_4350 0.73 -3.5 4,551,576 + Psest_4350 0.73 -1.4 4,551,576 + Psest_4350 0.73 -1.1 4,551,577 - Psest_4350 0.73 -0.0 4,551,577 - Psest_4350 0.73 -0.1 4,551,577 - Psest_4350 0.73 -0.1 4,551,793 - -0.4
Or see this region's nucleotide sequence