Experiment: Aerobic, no iron sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0631 and Psest_0632 overlap by 4 nucleotides Psest_0632 and Psest_0633 are separated by 0 nucleotides Psest_0633 and Psest_0634 overlap by 11 nucleotides
Psest_0631: Psest_0631 - Site-specific recombinase XerD, at 682,953 to 684,428
_0631
Psest_0632: Psest_0632 - hypothetical protein, at 684,425 to 685,033
_0632
Psest_0633: Psest_0633 - Phage integrase family., at 685,034 to 687,130
_0633
Psest_0634: Psest_0634 - hypothetical protein, at 687,120 to 689,402
_0634
Position (kb) 685
686
687
688 Strain fitness (log2 ratio) -2
-1
0
1 at 684.091 kb on - strand, within Psest_0631 at 684.134 kb on + strand, within Psest_0631 at 684.135 kb on - strand, within Psest_0631 at 684.169 kb on - strand, within Psest_0631 at 684.190 kb on + strand, within Psest_0631 at 684.228 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.274 kb on + strand, within Psest_0631 at 684.275 kb on - strand, within Psest_0631 at 684.350 kb on + strand at 684.368 kb on - strand at 684.390 kb on - strand at 684.390 kb on - strand at 684.398 kb on + strand at 684.521 kb on - strand, within Psest_0632 at 684.558 kb on - strand, within Psest_0632 at 684.577 kb on + strand, within Psest_0632 at 684.578 kb on - strand, within Psest_0632 at 684.675 kb on - strand, within Psest_0632 at 684.675 kb on - strand, within Psest_0632 at 684.854 kb on + strand, within Psest_0632 at 684.921 kb on - strand, within Psest_0632 at 685.069 kb on + strand at 685.180 kb on + strand at 685.206 kb on - strand at 685.215 kb on - strand at 685.310 kb on - strand, within Psest_0633 at 685.679 kb on + strand, within Psest_0633 at 685.806 kb on - strand, within Psest_0633 at 685.826 kb on - strand, within Psest_0633 at 685.827 kb on + strand, within Psest_0633 at 685.878 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.929 kb on - strand, within Psest_0633 at 685.986 kb on - strand, within Psest_0633 at 685.999 kb on + strand, within Psest_0633 at 686.000 kb on - strand, within Psest_0633 at 686.077 kb on - strand, within Psest_0633 at 686.180 kb on + strand, within Psest_0633 at 686.180 kb on + strand, within Psest_0633 at 686.181 kb on - strand, within Psest_0633 at 686.198 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.244 kb on + strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.245 kb on - strand, within Psest_0633 at 686.366 kb on + strand, within Psest_0633 at 686.484 kb on + strand, within Psest_0633 at 686.514 kb on + strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.556 kb on - strand, within Psest_0633 at 686.597 kb on + strand, within Psest_0633 at 686.598 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 686.856 kb on - strand, within Psest_0633 at 687.085 kb on - strand at 687.130 kb on + strand at 687.131 kb on - strand at 687.133 kb on - strand at 687.261 kb on + strand at 687.315 kb on + strand at 687.315 kb on + strand at 687.352 kb on + strand, within Psest_0634 at 687.353 kb on - strand, within Psest_0634 at 687.531 kb on + strand, within Psest_0634 at 687.673 kb on + strand, within Psest_0634 at 687.675 kb on + strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.676 kb on - strand, within Psest_0634 at 687.758 kb on + strand, within Psest_0634 at 687.882 kb on + strand, within Psest_0634 at 687.982 kb on - strand, within Psest_0634 at 688.076 kb on + strand, within Psest_0634
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic, no iron sample1 remove 684,091 - Psest_0631 0.77 -1.9 684,134 + Psest_0631 0.80 -0.5 684,135 - Psest_0631 0.80 -0.6 684,169 - Psest_0631 0.82 -0.0 684,190 + Psest_0631 0.84 -0.1 684,228 + Psest_0631 0.86 -1.2 684,261 + Psest_0631 0.89 -2.1 684,261 + Psest_0631 0.89 -0.3 684,261 + Psest_0631 0.89 -0.4 684,261 + Psest_0631 0.89 -0.2 684,261 + Psest_0631 0.89 -0.8 684,274 + Psest_0631 0.89 -0.0 684,275 - Psest_0631 0.90 -0.8 684,350 + -0.3 684,368 - -0.3 684,390 - -0.7 684,390 - -0.2 684,398 + -0.8 684,521 - Psest_0632 0.16 -0.3 684,558 - Psest_0632 0.22 -0.2 684,577 + Psest_0632 0.25 -0.2 684,578 - Psest_0632 0.25 -0.4 684,675 - Psest_0632 0.41 -0.9 684,675 - Psest_0632 0.41 -0.3 684,854 + Psest_0632 0.70 -1.0 684,921 - Psest_0632 0.81 -1.3 685,069 + +1.4 685,180 + +0.2 685,206 - -0.8 685,215 - -1.1 685,310 - Psest_0633 0.13 -0.6 685,679 + Psest_0633 0.31 +0.1 685,806 - Psest_0633 0.37 +0.0 685,826 - Psest_0633 0.38 -1.8 685,827 + Psest_0633 0.38 -1.6 685,878 + Psest_0633 0.40 -0.5 685,928 + Psest_0633 0.43 -0.5 685,928 + Psest_0633 0.43 -1.1 685,928 + Psest_0633 0.43 +0.2 685,928 + Psest_0633 0.43 -0.3 685,929 - Psest_0633 0.43 -0.4 685,986 - Psest_0633 0.45 +0.4 685,999 + Psest_0633 0.46 +0.3 686,000 - Psest_0633 0.46 +0.3 686,077 - Psest_0633 0.50 -0.2 686,180 + Psest_0633 0.55 -0.2 686,180 + Psest_0633 0.55 -0.9 686,181 - Psest_0633 0.55 -2.2 686,198 + Psest_0633 0.56 +0.8 686,244 + Psest_0633 0.58 -0.8 686,244 + Psest_0633 0.58 -1.2 686,245 - Psest_0633 0.58 -0.1 686,245 - Psest_0633 0.58 +0.0 686,366 + Psest_0633 0.64 -0.3 686,484 + Psest_0633 0.69 -0.9 686,514 + Psest_0633 0.71 -1.0 686,556 - Psest_0633 0.73 -0.3 686,556 - Psest_0633 0.73 -0.1 686,597 + Psest_0633 0.75 -0.0 686,598 - Psest_0633 0.75 -0.4 686,856 - Psest_0633 0.87 -0.2 686,856 - Psest_0633 0.87 -0.7 687,085 - +0.0 687,130 + +0.7 687,131 - -1.1 687,133 - -0.7 687,261 + +1.4 687,315 + +0.4 687,315 + -0.6 687,352 + Psest_0634 0.10 -0.5 687,353 - Psest_0634 0.10 -0.5 687,531 + Psest_0634 0.18 -0.0 687,673 + Psest_0634 0.24 -1.8 687,675 + Psest_0634 0.24 -0.0 687,676 - Psest_0634 0.24 -0.3 687,676 - Psest_0634 0.24 -0.3 687,676 - Psest_0634 0.24 -0.6 687,758 + Psest_0634 0.28 -0.7 687,882 + Psest_0634 0.33 -0.0 687,982 - Psest_0634 0.38 +0.0 688,076 + Psest_0634 0.42 -0.1
Or see this region's nucleotide sequence