Experiment: Aerobic, with iron sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2289 and Psest_2290 are separated by 3 nucleotides Psest_2290 and Psest_2291 overlap by 4 nucleotides
Psest_2289: Psest_2289 - Nitric oxide reductase activation protein, at 2,439,889 to 2,441,910
_2289
Psest_2290: Psest_2290 - MoxR-like ATPases, at 2,441,914 to 2,442,729
_2290
Psest_2291: Psest_2291 - Nitric oxide reductase large subunit, at 2,442,726 to 2,444,093
_2291
Position (kb)
2441
2442
2443 Strain fitness (log2 ratio)
-2
-1
0
1 at 2441.404 kb on + strand, within Psest_2289 at 2441.481 kb on - strand, within Psest_2289 at 2441.571 kb on + strand, within Psest_2289 at 2441.571 kb on + strand, within Psest_2289 at 2441.571 kb on + strand, within Psest_2289 at 2441.571 kb on + strand, within Psest_2289 at 2441.572 kb on - strand, within Psest_2289 at 2441.573 kb on + strand, within Psest_2289 at 2441.574 kb on - strand, within Psest_2289 at 2441.574 kb on - strand, within Psest_2289 at 2441.574 kb on - strand, within Psest_2289 at 2441.574 kb on - strand, within Psest_2289 at 2441.629 kb on - strand, within Psest_2289 at 2441.916 kb on - strand at 2441.916 kb on - strand at 2441.916 kb on - strand at 2442.272 kb on + strand, within Psest_2290 at 2442.272 kb on + strand, within Psest_2290 at 2442.272 kb on + strand, within Psest_2290 at 2442.273 kb on - strand, within Psest_2290 at 2442.430 kb on + strand, within Psest_2290 at 2442.431 kb on - strand, within Psest_2290 at 2442.431 kb on - strand, within Psest_2290 at 2442.431 kb on - strand, within Psest_2290 at 2442.671 kb on - strand at 2442.674 kb on + strand at 2442.674 kb on + strand at 2442.674 kb on + strand at 2442.675 kb on - strand at 2442.675 kb on - strand at 2442.675 kb on - strand at 2442.675 kb on - strand at 2442.675 kb on - strand at 2442.675 kb on - strand at 2442.738 kb on + strand at 2442.738 kb on + strand at 2442.738 kb on + strand at 2442.739 kb on - strand at 2442.739 kb on - strand at 2442.774 kb on + strand at 2442.774 kb on + strand at 2442.774 kb on + strand at 2442.774 kb on + strand at 2442.774 kb on + strand at 2442.775 kb on - strand at 2442.775 kb on - strand at 2442.775 kb on - strand at 2442.808 kb on + strand at 2442.808 kb on + strand at 2442.808 kb on + strand at 2442.808 kb on + strand at 2442.809 kb on - strand at 2442.809 kb on - strand at 2442.809 kb on - strand at 2442.925 kb on + strand, within Psest_2291 at 2443.057 kb on + strand, within Psest_2291 at 2443.058 kb on - strand, within Psest_2291 at 2443.058 kb on - strand, within Psest_2291 at 2443.058 kb on - strand, within Psest_2291 at 2443.058 kb on - strand, within Psest_2291 at 2443.096 kb on + strand, within Psest_2291 at 2443.097 kb on - strand, within Psest_2291 at 2443.166 kb on + strand, within Psest_2291 at 2443.166 kb on + strand, within Psest_2291 at 2443.167 kb on - strand, within Psest_2291 at 2443.167 kb on - strand, within Psest_2291 at 2443.241 kb on + strand, within Psest_2291 at 2443.242 kb on - strand, within Psest_2291 at 2443.351 kb on + strand, within Psest_2291 at 2443.351 kb on + strand, within Psest_2291 at 2443.372 kb on + strand, within Psest_2291 at 2443.376 kb on - strand, within Psest_2291 at 2443.406 kb on + strand, within Psest_2291 at 2443.429 kb on + strand, within Psest_2291 at 2443.429 kb on + strand, within Psest_2291 at 2443.429 kb on + strand, within Psest_2291 at 2443.429 kb on + strand, within Psest_2291 at 2443.429 kb on + strand, within Psest_2291 at 2443.430 kb on - strand, within Psest_2291 at 2443.430 kb on - strand, within Psest_2291 at 2443.430 kb on - strand, within Psest_2291 at 2443.483 kb on + strand, within Psest_2291 at 2443.483 kb on + strand, within Psest_2291 at 2443.484 kb on - strand, within Psest_2291 at 2443.552 kb on + strand, within Psest_2291 at 2443.553 kb on - strand, within Psest_2291 at 2443.570 kb on + strand, within Psest_2291 at 2443.571 kb on - strand, within Psest_2291 at 2443.571 kb on - strand, within Psest_2291 at 2443.571 kb on - strand, within Psest_2291 at 2443.600 kb on + strand, within Psest_2291 at 2443.600 kb on + strand, within Psest_2291 at 2443.600 kb on + strand, within Psest_2291 at 2443.600 kb on + strand, within Psest_2291 at 2443.601 kb on - strand, within Psest_2291 at 2443.601 kb on - strand, within Psest_2291 at 2443.601 kb on - strand, within Psest_2291 at 2443.601 kb on - strand, within Psest_2291 at 2443.691 kb on - strand, within Psest_2291
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic, with iron sample3 remove 2,441,404 + Psest_2289 0.75 -0.3 2,441,481 - Psest_2289 0.79 -0.4 2,441,571 + Psest_2289 0.83 -0.6 2,441,571 + Psest_2289 0.83 -0.7 2,441,571 + Psest_2289 0.83 -0.2 2,441,571 + Psest_2289 0.83 +0.2 2,441,572 - Psest_2289 0.83 +0.4 2,441,573 + Psest_2289 0.83 +1.4 2,441,574 - Psest_2289 0.83 +0.9 2,441,574 - Psest_2289 0.83 -0.6 2,441,574 - Psest_2289 0.83 -0.2 2,441,574 - Psest_2289 0.83 -0.4 2,441,629 - Psest_2289 0.86 +0.0 2,441,916 - +0.3 2,441,916 - -0.2 2,441,916 - +0.7 2,442,272 + Psest_2290 0.44 -0.6 2,442,272 + Psest_2290 0.44 +0.0 2,442,272 + Psest_2290 0.44 -0.4 2,442,273 - Psest_2290 0.44 -1.4 2,442,430 + Psest_2290 0.63 -0.7 2,442,431 - Psest_2290 0.63 -0.1 2,442,431 - Psest_2290 0.63 -1.0 2,442,431 - Psest_2290 0.63 -0.7 2,442,671 - -0.0 2,442,674 + -0.4 2,442,674 + +0.1 2,442,674 + -0.0 2,442,675 - -2.0 2,442,675 - +0.9 2,442,675 - +0.2 2,442,675 - -0.5 2,442,675 - -0.3 2,442,675 - -0.4 2,442,738 + -0.4 2,442,738 + -0.5 2,442,738 + -0.7 2,442,739 - +0.8 2,442,739 - -0.2 2,442,774 + -1.1 2,442,774 + -0.6 2,442,774 + +0.1 2,442,774 + +0.6 2,442,774 + -0.2 2,442,775 - -0.1 2,442,775 - +0.1 2,442,775 - +0.1 2,442,808 + -0.1 2,442,808 + +0.2 2,442,808 + +0.4 2,442,808 + -0.1 2,442,809 - +0.4 2,442,809 - -0.9 2,442,809 - -1.4 2,442,925 + Psest_2291 0.15 +0.1 2,443,057 + Psest_2291 0.24 -0.0 2,443,058 - Psest_2291 0.24 +0.2 2,443,058 - Psest_2291 0.24 +0.9 2,443,058 - Psest_2291 0.24 -0.2 2,443,058 - Psest_2291 0.24 -0.1 2,443,096 + Psest_2291 0.27 +0.1 2,443,097 - Psest_2291 0.27 -0.2 2,443,166 + Psest_2291 0.32 -0.5 2,443,166 + Psest_2291 0.32 +0.6 2,443,167 - Psest_2291 0.32 +0.1 2,443,167 - Psest_2291 0.32 -0.0 2,443,241 + Psest_2291 0.38 -0.1 2,443,242 - Psest_2291 0.38 +0.7 2,443,351 + Psest_2291 0.46 +0.0 2,443,351 + Psest_2291 0.46 +0.7 2,443,372 + Psest_2291 0.47 +0.3 2,443,376 - Psest_2291 0.48 -0.2 2,443,406 + Psest_2291 0.50 +0.2 2,443,429 + Psest_2291 0.51 -0.2 2,443,429 + Psest_2291 0.51 +0.1 2,443,429 + Psest_2291 0.51 -0.8 2,443,429 + Psest_2291 0.51 -0.1 2,443,429 + Psest_2291 0.51 -1.1 2,443,430 - Psest_2291 0.51 +0.8 2,443,430 - Psest_2291 0.51 +0.5 2,443,430 - Psest_2291 0.51 +0.0 2,443,483 + Psest_2291 0.55 -0.0 2,443,483 + Psest_2291 0.55 -0.5 2,443,484 - Psest_2291 0.55 +1.4 2,443,552 + Psest_2291 0.60 +0.4 2,443,553 - Psest_2291 0.60 +1.0 2,443,570 + Psest_2291 0.62 +0.1 2,443,571 - Psest_2291 0.62 +0.9 2,443,571 - Psest_2291 0.62 +0.2 2,443,571 - Psest_2291 0.62 +0.4 2,443,600 + Psest_2291 0.64 -0.2 2,443,600 + Psest_2291 0.64 +0.3 2,443,600 + Psest_2291 0.64 -2.0 2,443,600 + Psest_2291 0.64 -0.6 2,443,601 - Psest_2291 0.64 -0.5 2,443,601 - Psest_2291 0.64 +0.3 2,443,601 - Psest_2291 0.64 -0.6 2,443,601 - Psest_2291 0.64 +0.1 2,443,691 - Psest_2291 0.71 -0.1
Or see this region's nucleotide sequence