Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2290

Experiment: Aerobic, with iron sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2289 and Psest_2290 are separated by 3 nucleotidesPsest_2290 and Psest_2291 overlap by 4 nucleotides Psest_2289: Psest_2289 - Nitric oxide reductase activation protein, at 2,439,889 to 2,441,910 _2289 Psest_2290: Psest_2290 - MoxR-like ATPases, at 2,441,914 to 2,442,729 _2290 Psest_2291: Psest_2291 - Nitric oxide reductase large subunit, at 2,442,726 to 2,444,093 _2291 Position (kb) 2441 2442 2443Strain fitness (log2 ratio) -2 -1 0 1at 2441.404 kb on + strand, within Psest_2289at 2441.481 kb on - strand, within Psest_2289at 2441.571 kb on + strand, within Psest_2289at 2441.571 kb on + strand, within Psest_2289at 2441.571 kb on + strand, within Psest_2289at 2441.571 kb on + strand, within Psest_2289at 2441.572 kb on - strand, within Psest_2289at 2441.573 kb on + strand, within Psest_2289at 2441.574 kb on - strand, within Psest_2289at 2441.574 kb on - strand, within Psest_2289at 2441.574 kb on - strand, within Psest_2289at 2441.574 kb on - strand, within Psest_2289at 2441.629 kb on - strand, within Psest_2289at 2441.916 kb on - strandat 2441.916 kb on - strandat 2441.916 kb on - strandat 2442.272 kb on + strand, within Psest_2290at 2442.272 kb on + strand, within Psest_2290at 2442.272 kb on + strand, within Psest_2290at 2442.273 kb on - strand, within Psest_2290at 2442.430 kb on + strand, within Psest_2290at 2442.431 kb on - strand, within Psest_2290at 2442.431 kb on - strand, within Psest_2290at 2442.431 kb on - strand, within Psest_2290at 2442.671 kb on - strandat 2442.674 kb on + strandat 2442.674 kb on + strandat 2442.674 kb on + strandat 2442.675 kb on - strandat 2442.675 kb on - strandat 2442.675 kb on - strandat 2442.675 kb on - strandat 2442.675 kb on - strandat 2442.675 kb on - strandat 2442.738 kb on + strandat 2442.738 kb on + strandat 2442.738 kb on + strandat 2442.739 kb on - strandat 2442.739 kb on - strandat 2442.774 kb on + strandat 2442.774 kb on + strandat 2442.774 kb on + strandat 2442.774 kb on + strandat 2442.774 kb on + strandat 2442.775 kb on - strandat 2442.775 kb on - strandat 2442.775 kb on - strandat 2442.808 kb on + strandat 2442.808 kb on + strandat 2442.808 kb on + strandat 2442.808 kb on + strandat 2442.809 kb on - strandat 2442.809 kb on - strandat 2442.809 kb on - strandat 2442.925 kb on + strand, within Psest_2291at 2443.057 kb on + strand, within Psest_2291at 2443.058 kb on - strand, within Psest_2291at 2443.058 kb on - strand, within Psest_2291at 2443.058 kb on - strand, within Psest_2291at 2443.058 kb on - strand, within Psest_2291at 2443.096 kb on + strand, within Psest_2291at 2443.097 kb on - strand, within Psest_2291at 2443.166 kb on + strand, within Psest_2291at 2443.166 kb on + strand, within Psest_2291at 2443.167 kb on - strand, within Psest_2291at 2443.167 kb on - strand, within Psest_2291at 2443.241 kb on + strand, within Psest_2291at 2443.242 kb on - strand, within Psest_2291at 2443.351 kb on + strand, within Psest_2291at 2443.351 kb on + strand, within Psest_2291at 2443.372 kb on + strand, within Psest_2291at 2443.376 kb on - strand, within Psest_2291at 2443.406 kb on + strand, within Psest_2291at 2443.429 kb on + strand, within Psest_2291at 2443.429 kb on + strand, within Psest_2291at 2443.429 kb on + strand, within Psest_2291at 2443.429 kb on + strand, within Psest_2291at 2443.429 kb on + strand, within Psest_2291at 2443.430 kb on - strand, within Psest_2291at 2443.430 kb on - strand, within Psest_2291at 2443.430 kb on - strand, within Psest_2291at 2443.483 kb on + strand, within Psest_2291at 2443.483 kb on + strand, within Psest_2291at 2443.484 kb on - strand, within Psest_2291at 2443.552 kb on + strand, within Psest_2291at 2443.553 kb on - strand, within Psest_2291at 2443.570 kb on + strand, within Psest_2291at 2443.571 kb on - strand, within Psest_2291at 2443.571 kb on - strand, within Psest_2291at 2443.571 kb on - strand, within Psest_2291at 2443.600 kb on + strand, within Psest_2291at 2443.600 kb on + strand, within Psest_2291at 2443.600 kb on + strand, within Psest_2291at 2443.600 kb on + strand, within Psest_2291at 2443.601 kb on - strand, within Psest_2291at 2443.601 kb on - strand, within Psest_2291at 2443.601 kb on - strand, within Psest_2291at 2443.601 kb on - strand, within Psest_2291at 2443.691 kb on - strand, within Psest_2291

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic, with iron sample3
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2,441,404 + Psest_2289 0.75 -0.3
2,441,481 - Psest_2289 0.79 -0.4
2,441,571 + Psest_2289 0.83 -0.6
2,441,571 + Psest_2289 0.83 -0.7
2,441,571 + Psest_2289 0.83 -0.2
2,441,571 + Psest_2289 0.83 +0.2
2,441,572 - Psest_2289 0.83 +0.4
2,441,573 + Psest_2289 0.83 +1.4
2,441,574 - Psest_2289 0.83 +0.9
2,441,574 - Psest_2289 0.83 -0.6
2,441,574 - Psest_2289 0.83 -0.2
2,441,574 - Psest_2289 0.83 -0.4
2,441,629 - Psest_2289 0.86 +0.0
2,441,916 - +0.3
2,441,916 - -0.2
2,441,916 - +0.7
2,442,272 + Psest_2290 0.44 -0.6
2,442,272 + Psest_2290 0.44 +0.0
2,442,272 + Psest_2290 0.44 -0.4
2,442,273 - Psest_2290 0.44 -1.4
2,442,430 + Psest_2290 0.63 -0.7
2,442,431 - Psest_2290 0.63 -0.1
2,442,431 - Psest_2290 0.63 -1.0
2,442,431 - Psest_2290 0.63 -0.7
2,442,671 - -0.0
2,442,674 + -0.4
2,442,674 + +0.1
2,442,674 + -0.0
2,442,675 - -2.0
2,442,675 - +0.9
2,442,675 - +0.2
2,442,675 - -0.5
2,442,675 - -0.3
2,442,675 - -0.4
2,442,738 + -0.4
2,442,738 + -0.5
2,442,738 + -0.7
2,442,739 - +0.8
2,442,739 - -0.2
2,442,774 + -1.1
2,442,774 + -0.6
2,442,774 + +0.1
2,442,774 + +0.6
2,442,774 + -0.2
2,442,775 - -0.1
2,442,775 - +0.1
2,442,775 - +0.1
2,442,808 + -0.1
2,442,808 + +0.2
2,442,808 + +0.4
2,442,808 + -0.1
2,442,809 - +0.4
2,442,809 - -0.9
2,442,809 - -1.4
2,442,925 + Psest_2291 0.15 +0.1
2,443,057 + Psest_2291 0.24 -0.0
2,443,058 - Psest_2291 0.24 +0.2
2,443,058 - Psest_2291 0.24 +0.9
2,443,058 - Psest_2291 0.24 -0.2
2,443,058 - Psest_2291 0.24 -0.1
2,443,096 + Psest_2291 0.27 +0.1
2,443,097 - Psest_2291 0.27 -0.2
2,443,166 + Psest_2291 0.32 -0.5
2,443,166 + Psest_2291 0.32 +0.6
2,443,167 - Psest_2291 0.32 +0.1
2,443,167 - Psest_2291 0.32 -0.0
2,443,241 + Psest_2291 0.38 -0.1
2,443,242 - Psest_2291 0.38 +0.7
2,443,351 + Psest_2291 0.46 +0.0
2,443,351 + Psest_2291 0.46 +0.7
2,443,372 + Psest_2291 0.47 +0.3
2,443,376 - Psest_2291 0.48 -0.2
2,443,406 + Psest_2291 0.50 +0.2
2,443,429 + Psest_2291 0.51 -0.2
2,443,429 + Psest_2291 0.51 +0.1
2,443,429 + Psest_2291 0.51 -0.8
2,443,429 + Psest_2291 0.51 -0.1
2,443,429 + Psest_2291 0.51 -1.1
2,443,430 - Psest_2291 0.51 +0.8
2,443,430 - Psest_2291 0.51 +0.5
2,443,430 - Psest_2291 0.51 +0.0
2,443,483 + Psest_2291 0.55 -0.0
2,443,483 + Psest_2291 0.55 -0.5
2,443,484 - Psest_2291 0.55 +1.4
2,443,552 + Psest_2291 0.60 +0.4
2,443,553 - Psest_2291 0.60 +1.0
2,443,570 + Psest_2291 0.62 +0.1
2,443,571 - Psest_2291 0.62 +0.9
2,443,571 - Psest_2291 0.62 +0.2
2,443,571 - Psest_2291 0.62 +0.4
2,443,600 + Psest_2291 0.64 -0.2
2,443,600 + Psest_2291 0.64 +0.3
2,443,600 + Psest_2291 0.64 -2.0
2,443,600 + Psest_2291 0.64 -0.6
2,443,601 - Psest_2291 0.64 -0.5
2,443,601 - Psest_2291 0.64 +0.3
2,443,601 - Psest_2291 0.64 -0.6
2,443,601 - Psest_2291 0.64 +0.1
2,443,691 - Psest_2291 0.71 -0.1

Or see this region's nucleotide sequence