Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4199

Experiment: Aerobic, with iron sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4197 and Psest_4198 overlap by 4 nucleotidesPsest_4198 and Psest_4199 overlap by 4 nucleotidesPsest_4199 and Psest_4200 are separated by 3 nucleotidesPsest_4200 and Psest_4201 overlap by 1 nucleotides Psest_4197: Psest_4197 - general secretion pathway protein J, at 4,375,924 to 4,376,637 _4197 Psest_4198: Psest_4198 - general secretion pathway protein I, at 4,376,634 to 4,377,053 _4198 Psest_4199: Psest_4199 - general secretion pathway protein H, at 4,377,050 to 4,377,619 _4199 Psest_4200: Psest_4200 - general secretion pathway protein G, at 4,377,623 to 4,378,063 _4200 Psest_4201: Psest_4201 - general secretion pathway protein F, at 4,378,063 to 4,379,277 _4201 Position (kb) 4377 4378Strain fitness (log2 ratio) -1 0 1at 4376.247 kb on - strand, within Psest_4197at 4376.434 kb on + strand, within Psest_4197at 4376.435 kb on - strand, within Psest_4197at 4376.435 kb on - strand, within Psest_4197at 4376.546 kb on + strand, within Psest_4197at 4376.547 kb on - strand, within Psest_4197at 4377.001 kb on - strand, within Psest_4198at 4377.185 kb on + strand, within Psest_4199at 4377.185 kb on + strand, within Psest_4199at 4377.185 kb on + strand, within Psest_4199at 4377.185 kb on + strand, within Psest_4199at 4377.185 kb on + strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.278 kb on + strand, within Psest_4199at 4377.278 kb on + strand, within Psest_4199at 4377.278 kb on + strand, within Psest_4199at 4377.279 kb on - strand, within Psest_4199at 4377.279 kb on - strand, within Psest_4199at 4377.279 kb on - strand, within Psest_4199at 4377.638 kb on - strandat 4377.693 kb on + strand, within Psest_4200at 4377.693 kb on + strand, within Psest_4200at 4377.694 kb on - strand, within Psest_4200at 4377.729 kb on + strand, within Psest_4200at 4377.729 kb on + strand, within Psest_4200at 4377.730 kb on - strand, within Psest_4200at 4377.730 kb on - strand, within Psest_4200at 4377.858 kb on + strand, within Psest_4200at 4377.858 kb on + strand, within Psest_4200at 4377.859 kb on - strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.883 kb on + strand, within Psest_4200at 4377.884 kb on - strand, within Psest_4200

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic, with iron sample2
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4,376,247 - Psest_4197 0.45 -0.7
4,376,434 + Psest_4197 0.71 -0.2
4,376,435 - Psest_4197 0.72 +0.0
4,376,435 - Psest_4197 0.72 +0.1
4,376,546 + Psest_4197 0.87 +0.5
4,376,547 - Psest_4197 0.87 +0.3
4,377,001 - Psest_4198 0.87 +1.5
4,377,185 + Psest_4199 0.24 -0.1
4,377,185 + Psest_4199 0.24 +0.0
4,377,185 + Psest_4199 0.24 -0.6
4,377,185 + Psest_4199 0.24 -1.2
4,377,185 + Psest_4199 0.24 -0.4
4,377,186 - Psest_4199 0.24 -0.4
4,377,186 - Psest_4199 0.24 -1.1
4,377,186 - Psest_4199 0.24 -1.4
4,377,186 - Psest_4199 0.24 -0.5
4,377,186 - Psest_4199 0.24 -0.8
4,377,278 + Psest_4199 0.40 -1.5
4,377,278 + Psest_4199 0.40 -0.3
4,377,278 + Psest_4199 0.40 -0.8
4,377,279 - Psest_4199 0.40 -0.9
4,377,279 - Psest_4199 0.40 +1.3
4,377,279 - Psest_4199 0.40 +0.8
4,377,638 - -0.1
4,377,693 + Psest_4200 0.16 -0.1
4,377,693 + Psest_4200 0.16 -0.1
4,377,694 - Psest_4200 0.16 -0.1
4,377,729 + Psest_4200 0.24 +1.0
4,377,729 + Psest_4200 0.24 -0.1
4,377,730 - Psest_4200 0.24 +1.1
4,377,730 - Psest_4200 0.24 -1.2
4,377,858 + Psest_4200 0.53 +1.6
4,377,858 + Psest_4200 0.53 -1.1
4,377,859 - Psest_4200 0.54 -0.1
4,377,879 + Psest_4200 0.58 -0.2
4,377,879 + Psest_4200 0.58 -0.4
4,377,879 + Psest_4200 0.58 +0.2
4,377,879 + Psest_4200 0.58 -0.4
4,377,879 + Psest_4200 0.58 -0.3
4,377,879 + Psest_4200 0.58 -0.2
4,377,879 + Psest_4200 0.58 -0.1
4,377,879 + Psest_4200 0.58 -0.8
4,377,879 + Psest_4200 0.58 +0.0
4,377,879 + Psest_4200 0.58 +0.2
4,377,879 + Psest_4200 0.58 -0.7
4,377,879 + Psest_4200 0.58 -0.5
4,377,879 + Psest_4200 0.58 -0.5
4,377,879 + Psest_4200 0.58 -1.5
4,377,879 + Psest_4200 0.58 -1.1
4,377,879 + Psest_4200 0.58 -0.5
4,377,879 + Psest_4200 0.58 -0.3
4,377,879 + Psest_4200 0.58 +0.4
4,377,879 + Psest_4200 0.58 -1.0
4,377,880 - Psest_4200 0.58 -0.2
4,377,880 - Psest_4200 0.58 -0.5
4,377,880 - Psest_4200 0.58 -0.4
4,377,880 - Psest_4200 0.58 +0.8
4,377,880 - Psest_4200 0.58 +0.0
4,377,880 - Psest_4200 0.58 +1.1
4,377,880 - Psest_4200 0.58 -0.6
4,377,880 - Psest_4200 0.58 -0.6
4,377,880 - Psest_4200 0.58 -0.8
4,377,880 - Psest_4200 0.58 -0.1
4,377,880 - Psest_4200 0.58 -0.4
4,377,880 - Psest_4200 0.58 -1.1
4,377,880 - Psest_4200 0.58 -0.3
4,377,880 - Psest_4200 0.58 -0.8
4,377,880 - Psest_4200 0.58 -0.4
4,377,880 - Psest_4200 0.58 +0.2
4,377,880 - Psest_4200 0.58 -0.1
4,377,880 - Psest_4200 0.58 +0.4
4,377,883 + Psest_4200 0.59 -0.4
4,377,884 - Psest_4200 0.59 -0.8

Or see this region's nucleotide sequence