Experiment: Anaerobic 50 uM Lead (II) nitrate sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4383 and Psest_4384 are separated by 138 nucleotides Psest_4384 and Psest_4385 overlap by 17 nucleotides Psest_4385 and Psest_4386 are separated by 150 nucleotides Psest_4386 and Psest_4387 overlap by 4 nucleotides Psest_4387 and Psest_4388 are separated by 431 nucleotides
Psest_4383: Psest_4383 - Site-specific recombinases, DNA invertase Pin homologs, at 4,443 to 5,000
_4383
Psest_4384: Psest_4384 - hypothetical protein, at 5,139 to 5,330
_4384
Psest_4385: Psest_4385 - hypothetical protein, at 5,314 to 5,544
_4385
Psest_4386: Psest_4386 - hypothetical protein, at 5,695 to 5,970
_4386
Psest_4387: Psest_4387 - hypothetical protein, at 5,967 to 6,164
_4387
Psest_4388: Psest_4388 - hypothetical protein, at 6,596 to 7,981
_4388
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4.978 kb on + strand at 4.978 kb on - strand at 4.979 kb on - strand at 4.979 kb on - strand at 4.979 kb on - strand at 4.979 kb on - strand at 4.979 kb on - strand at 4.979 kb on - strand at 4.980 kb on + strand at 4.998 kb on + strand at 4.998 kb on + strand at 4.999 kb on - strand at 4.999 kb on - strand at 5.004 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.014 kb on + strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.015 kb on - strand at 5.024 kb on - strand at 5.080 kb on + strand at 5.081 kb on - strand at 5.081 kb on - strand at 5.097 kb on + strand at 5.098 kb on - strand at 5.098 kb on - strand at 5.342 kb on + strand, within Psest_4385 at 5.342 kb on + strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.343 kb on - strand, within Psest_4385 at 5.367 kb on + strand, within Psest_4385 at 5.367 kb on + strand, within Psest_4385 at 5.367 kb on + strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.368 kb on - strand, within Psest_4385 at 5.445 kb on - strand, within Psest_4385 at 5.445 kb on - strand, within Psest_4385 at 5.445 kb on - strand, within Psest_4385 at 5.445 kb on - strand, within Psest_4385 at 5.542 kb on + strand at 5.543 kb on - strand at 5.556 kb on + strand at 5.556 kb on + strand at 5.557 kb on - strand at 5.557 kb on - strand at 5.557 kb on - strand at 5.581 kb on - strand at 5.583 kb on - strand at 5.681 kb on + strand at 5.681 kb on + strand at 5.682 kb on - strand at 5.682 kb on - strand at 5.682 kb on - strand at 5.682 kb on - strand at 5.682 kb on - strand at 5.682 kb on - strand at 5.721 kb on - strand at 5.737 kb on - strand, within Psest_4386 at 5.775 kb on - strand, within Psest_4386 at 5.797 kb on - strand, within Psest_4386 at 5.797 kb on - strand, within Psest_4386 at 5.797 kb on - strand, within Psest_4386 at 5.816 kb on + strand, within Psest_4386 at 5.816 kb on + strand, within Psest_4386 at 5.817 kb on - strand, within Psest_4386 at 5.817 kb on - strand, within Psest_4386 at 5.817 kb on - strand, within Psest_4386 at 5.817 kb on - strand, within Psest_4386 at 5.817 kb on - strand, within Psest_4386 at 5.817 kb on - strand, within Psest_4386 at 5.817 kb on - strand, within Psest_4386 at 5.817 kb on - strand, within Psest_4386 at 5.829 kb on + strand, within Psest_4386 at 5.830 kb on - strand, within Psest_4386 at 5.830 kb on - strand, within Psest_4386 at 5.830 kb on - strand, within Psest_4386 at 5.830 kb on - strand, within Psest_4386 at 5.830 kb on - strand, within Psest_4386 at 5.830 kb on - strand, within Psest_4386 at 5.830 kb on - strand, within Psest_4386 at 5.830 kb on - strand, within Psest_4386 at 5.834 kb on + strand, within Psest_4386 at 5.834 kb on + strand, within Psest_4386 at 5.835 kb on - strand, within Psest_4386 at 5.835 kb on - strand, within Psest_4386 at 5.835 kb on - strand, within Psest_4386 at 5.835 kb on - strand, within Psest_4386 at 5.835 kb on - strand, within Psest_4386 at 5.835 kb on - strand, within Psest_4386 at 5.890 kb on + strand, within Psest_4386 at 5.890 kb on + strand, within Psest_4386 at 5.890 kb on + strand, within Psest_4386 at 5.891 kb on - strand, within Psest_4386 at 5.891 kb on - strand, within Psest_4386 at 5.891 kb on - strand, within Psest_4386 at 5.891 kb on - strand, within Psest_4386 at 5.891 kb on - strand, within Psest_4386 at 5.891 kb on - strand, within Psest_4386 at 5.924 kb on - strand, within Psest_4386 at 5.924 kb on - strand, within Psest_4386 at 5.924 kb on - strand, within Psest_4386 at 5.977 kb on - strand at 5.977 kb on - strand at 5.977 kb on - strand at 6.024 kb on + strand, within Psest_4387 at 6.024 kb on + strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.025 kb on - strand, within Psest_4387 at 6.159 kb on - strand at 6.159 kb on - strand at 6.195 kb on + strand at 6.195 kb on + strand at 6.196 kb on - strand at 6.196 kb on - strand at 6.196 kb on - strand at 6.199 kb on + strand at 6.199 kb on + strand at 6.199 kb on + strand at 6.199 kb on + strand at 6.200 kb on - strand at 6.200 kb on - strand at 6.202 kb on - strand at 6.233 kb on - strand at 6.233 kb on - strand at 6.233 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.244 kb on - strand at 6.293 kb on - strand at 6.326 kb on + strand at 6.327 kb on - strand at 6.327 kb on - strand at 6.327 kb on - strand at 6.327 kb on - strand at 6.350 kb on - strand at 6.350 kb on - strand at 6.352 kb on + strand at 6.353 kb on - strand at 6.367 kb on + strand at 6.368 kb on - strand at 6.394 kb on + strand at 6.395 kb on - strand at 6.395 kb on - strand at 6.395 kb on - strand at 6.395 kb on - strand at 6.395 kb on - strand at 6.398 kb on - strand at 6.398 kb on - strand at 6.426 kb on - strand at 6.471 kb on + strand at 6.472 kb on - strand at 6.472 kb on - strand at 6.472 kb on - strand at 6.498 kb on - strand at 6.513 kb on - strand at 6.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3 remove 4,978 + +2.4 4,978 - +1.2 4,979 - +0.3 4,979 - +0.6 4,979 - +0.4 4,979 - +0.8 4,979 - +1.4 4,979 - +0.6 4,980 + -0.2 4,998 + +1.1 4,998 + +4.0 4,999 - -0.1 4,999 - +0.6 5,004 + +2.1 5,014 + +0.8 5,014 + +0.5 5,014 + +0.5 5,014 + -0.0 5,014 + +1.4 5,014 + +0.8 5,015 - +1.5 5,015 - -1.0 5,015 - +2.4 5,015 - -0.7 5,015 - +1.8 5,015 - +1.1 5,015 - +0.9 5,015 - +0.3 5,015 - +1.8 5,015 - -0.6 5,015 - +0.4 5,015 - +0.6 5,015 - +0.6 5,024 - +0.7 5,080 + +1.8 5,081 - +1.1 5,081 - +2.6 5,097 + -0.8 5,098 - +0.5 5,098 - +0.8 5,342 + Psest_4385 0.12 +0.2 5,342 + Psest_4385 0.12 -0.1 5,343 - Psest_4385 0.13 +2.4 5,343 - Psest_4385 0.13 +0.4 5,343 - Psest_4385 0.13 -0.9 5,343 - Psest_4385 0.13 +3.4 5,343 - Psest_4385 0.13 -0.9 5,343 - Psest_4385 0.13 +1.1 5,343 - Psest_4385 0.13 +2.1 5,343 - Psest_4385 0.13 -0.9 5,343 - Psest_4385 0.13 +2.1 5,367 + Psest_4385 0.23 +1.6 5,367 + Psest_4385 0.23 +0.9 5,367 + Psest_4385 0.23 +1.1 5,368 - Psest_4385 0.23 +2.4 5,368 - Psest_4385 0.23 +0.6 5,368 - Psest_4385 0.23 -0.1 5,368 - Psest_4385 0.23 +0.7 5,368 - Psest_4385 0.23 +1.8 5,368 - Psest_4385 0.23 +0.1 5,368 - Psest_4385 0.23 +3.4 5,368 - Psest_4385 0.23 +0.9 5,368 - Psest_4385 0.23 -2.1 5,445 - Psest_4385 0.57 +1.4 5,445 - Psest_4385 0.57 +1.2 5,445 - Psest_4385 0.57 -0.7 5,445 - Psest_4385 0.57 -0.3 5,542 + +0.8 5,543 - -1.6 5,556 + +0.2 5,556 + -0.7 5,557 - -0.4 5,557 - +1.2 5,557 - +0.7 5,581 - +1.2 5,583 - +2.2 5,681 + +2.4 5,681 + -1.0 5,682 - +0.4 5,682 - +0.4 5,682 - +0.5 5,682 - +1.3 5,682 - +1.4 5,682 - +0.6 5,721 - -0.1 5,737 - Psest_4386 0.15 +2.4 5,775 - Psest_4386 0.29 +1.4 5,797 - Psest_4386 0.37 -0.6 5,797 - Psest_4386 0.37 +1.7 5,797 - Psest_4386 0.37 +0.7 5,816 + Psest_4386 0.44 +0.1 5,816 + Psest_4386 0.44 +0.8 5,817 - Psest_4386 0.44 -2.1 5,817 - Psest_4386 0.44 -0.5 5,817 - Psest_4386 0.44 +1.8 5,817 - Psest_4386 0.44 -0.4 5,817 - Psest_4386 0.44 -0.4 5,817 - Psest_4386 0.44 +0.9 5,817 - Psest_4386 0.44 +1.1 5,817 - Psest_4386 0.44 -0.4 5,829 + Psest_4386 0.49 +1.4 5,830 - Psest_4386 0.49 +1.4 5,830 - Psest_4386 0.49 -1.1 5,830 - Psest_4386 0.49 +0.8 5,830 - Psest_4386 0.49 -0.2 5,830 - Psest_4386 0.49 +0.6 5,830 - Psest_4386 0.49 +0.8 5,830 - Psest_4386 0.49 -0.3 5,830 - Psest_4386 0.49 +1.5 5,834 + Psest_4386 0.50 +0.2 5,834 + Psest_4386 0.50 -0.3 5,835 - Psest_4386 0.51 -1.2 5,835 - Psest_4386 0.51 -0.5 5,835 - Psest_4386 0.51 +0.5 5,835 - Psest_4386 0.51 -0.8 5,835 - Psest_4386 0.51 +1.4 5,835 - Psest_4386 0.51 +1.4 5,890 + Psest_4386 0.71 +2.4 5,890 + Psest_4386 0.71 +2.1 5,890 + Psest_4386 0.71 +2.4 5,891 - Psest_4386 0.71 -0.2 5,891 - Psest_4386 0.71 +2.4 5,891 - Psest_4386 0.71 -1.9 5,891 - Psest_4386 0.71 -0.5 5,891 - Psest_4386 0.71 +1.9 5,891 - Psest_4386 0.71 +0.3 5,924 - Psest_4386 0.83 +1.3 5,924 - Psest_4386 0.83 +3.4 5,924 - Psest_4386 0.83 -0.2 5,977 - -1.2 5,977 - -0.7 5,977 - -0.0 6,024 + Psest_4387 0.29 +0.9 6,024 + Psest_4387 0.29 -1.1 6,025 - Psest_4387 0.29 +0.8 6,025 - Psest_4387 0.29 -0.9 6,025 - Psest_4387 0.29 +0.8 6,025 - Psest_4387 0.29 +0.1 6,025 - Psest_4387 0.29 +2.6 6,025 - Psest_4387 0.29 +2.4 6,025 - Psest_4387 0.29 +0.7 6,025 - Psest_4387 0.29 -0.4 6,025 - Psest_4387 0.29 +0.5 6,025 - Psest_4387 0.29 +0.9 6,025 - Psest_4387 0.29 +0.4 6,025 - Psest_4387 0.29 -0.3 6,025 - Psest_4387 0.29 -0.4 6,025 - Psest_4387 0.29 +0.6 6,025 - Psest_4387 0.29 +1.1 6,025 - Psest_4387 0.29 +0.6 6,025 - Psest_4387 0.29 +1.5 6,025 - Psest_4387 0.29 +0.6 6,025 - Psest_4387 0.29 +1.4 6,025 - Psest_4387 0.29 +0.5 6,025 - Psest_4387 0.29 +0.6 6,025 - Psest_4387 0.29 -0.2 6,159 - +0.8 6,159 - -1.0 6,195 + +2.0 6,195 + +0.2 6,196 - -1.4 6,196 - +0.4 6,196 - -0.7 6,199 + +0.1 6,199 + +1.2 6,199 + -1.5 6,199 + +0.8 6,200 - -1.7 6,200 - -0.2 6,202 - -0.6 6,233 - +1.5 6,233 - +1.2 6,233 - +0.2 6,244 - +1.0 6,244 - +0.6 6,244 - +0.7 6,244 - +0.3 6,244 - +0.4 6,244 - +0.8 6,244 - +0.5 6,244 - +2.4 6,244 - +0.8 6,244 - -0.3 6,293 - +1.2 6,326 + +1.0 6,327 - +0.4 6,327 - +1.4 6,327 - -0.2 6,327 - +1.1 6,350 - -0.5 6,350 - +1.1 6,352 + -0.3 6,353 - +1.6 6,367 + -1.1 6,368 - -0.4 6,394 + +0.2 6,395 - +0.1 6,395 - -0.1 6,395 - +1.3 6,395 - -1.1 6,395 - -0.6 6,398 - +0.2 6,398 - -0.1 6,426 - +0.1 6,471 + +0.4 6,472 - +0.5 6,472 - -1.1 6,472 - +1.5 6,498 - +1.4 6,513 - +0.8 6,598 - +1.2
Or see this region's nucleotide sequence