Experiment: Anaerobic 50 uM Lead (II) nitrate sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2845 and Psest_2846 are separated by 52 nucleotides Psest_2846 and Psest_2847 are separated by 9 nucleotides Psest_2847 and Psest_2848 overlap by 16 nucleotides Psest_2848 and Psest_2849 overlap by 4 nucleotides
Psest_2845: Psest_2845 - [Protein-PII] uridylyltransferase, at 3,035,056 to 3,037,758
_2845
Psest_2846: Psest_2846 - monovalent cation/proton antiporter, MnhG/PhaG subunit, at 3,037,811 to 3,038,140
_2846
Psest_2847: Psest_2847 - Multisubunit Na+/H+ antiporter, MnhF subunit, at 3,038,150 to 3,038,419
_2847
Psest_2848: Psest_2848 - Multisubunit Na+/H+ antiporter, MnhE subunit, at 3,038,404 to 3,038,904
_2848
Psest_2849: Psest_2849 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 3,038,901 to 3,040,400
_2849
Position (kb)
3038
3039 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3037.882 kb on + strand, within Psest_2846 at 3037.882 kb on + strand, within Psest_2846 at 3037.882 kb on + strand, within Psest_2846 at 3037.882 kb on + strand, within Psest_2846 at 3037.883 kb on - strand, within Psest_2846 at 3037.883 kb on - strand, within Psest_2846 at 3037.883 kb on - strand, within Psest_2846 at 3037.997 kb on + strand, within Psest_2846 at 3038.120 kb on + strand at 3038.121 kb on - strand at 3038.121 kb on - strand at 3038.161 kb on + strand at 3038.197 kb on + strand, within Psest_2847 at 3038.298 kb on + strand, within Psest_2847 at 3038.298 kb on + strand, within Psest_2847 at 3038.299 kb on - strand, within Psest_2847 at 3038.299 kb on - strand, within Psest_2847 at 3038.299 kb on - strand, within Psest_2847 at 3038.405 kb on + strand at 3038.406 kb on - strand at 3038.409 kb on + strand at 3038.410 kb on - strand at 3038.447 kb on + strand at 3038.447 kb on + strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.448 kb on - strand at 3038.696 kb on + strand, within Psest_2848 at 3038.784 kb on + strand, within Psest_2848 at 3038.932 kb on + strand at 3038.933 kb on - strand at 3039.327 kb on + strand, within Psest_2849 at 3039.327 kb on + strand, within Psest_2849 at 3039.327 kb on + strand, within Psest_2849 at 3039.328 kb on - strand, within Psest_2849 at 3039.328 kb on - strand, within Psest_2849 at 3039.328 kb on - strand, within Psest_2849 at 3039.403 kb on + strand, within Psest_2849 at 3039.407 kb on - strand, within Psest_2849 at 3039.407 kb on - strand, within Psest_2849 at 3039.407 kb on - strand, within Psest_2849
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3 remove 3,037,882 + Psest_2846 0.22 -0.6 3,037,882 + Psest_2846 0.22 +0.8 3,037,882 + Psest_2846 0.22 -0.7 3,037,882 + Psest_2846 0.22 -0.0 3,037,883 - Psest_2846 0.22 -0.3 3,037,883 - Psest_2846 0.22 +0.0 3,037,883 - Psest_2846 0.22 +0.4 3,037,997 + Psest_2846 0.56 -1.0 3,038,120 + +0.0 3,038,121 - +0.7 3,038,121 - -0.5 3,038,161 + -0.5 3,038,197 + Psest_2847 0.17 +0.8 3,038,298 + Psest_2847 0.55 +0.1 3,038,298 + Psest_2847 0.55 +0.1 3,038,299 - Psest_2847 0.55 +0.8 3,038,299 - Psest_2847 0.55 +1.9 3,038,299 - Psest_2847 0.55 -0.0 3,038,405 + -0.5 3,038,406 - -1.1 3,038,409 + -0.6 3,038,410 - +0.1 3,038,447 + -0.2 3,038,447 + -0.9 3,038,448 - +1.0 3,038,448 - +0.2 3,038,448 - -2.6 3,038,448 - +0.5 3,038,448 - +0.4 3,038,448 - -0.4 3,038,696 + Psest_2848 0.58 -0.3 3,038,784 + Psest_2848 0.76 -0.3 3,038,932 + +0.4 3,038,933 - +0.0 3,039,327 + Psest_2849 0.28 +0.2 3,039,327 + Psest_2849 0.28 -0.9 3,039,327 + Psest_2849 0.28 +0.9 3,039,328 - Psest_2849 0.28 -0.7 3,039,328 - Psest_2849 0.28 -0.4 3,039,328 - Psest_2849 0.28 -0.4 3,039,403 + Psest_2849 0.33 -0.2 3,039,407 - Psest_2849 0.34 +0.1 3,039,407 - Psest_2849 0.34 +0.1 3,039,407 - Psest_2849 0.34 +0.1
Or see this region's nucleotide sequence