Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2847

Experiment: Anaerobic 50 uM Lead (II) nitrate sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2845 and Psest_2846 are separated by 52 nucleotidesPsest_2846 and Psest_2847 are separated by 9 nucleotidesPsest_2847 and Psest_2848 overlap by 16 nucleotidesPsest_2848 and Psest_2849 overlap by 4 nucleotides Psest_2845: Psest_2845 - [Protein-PII] uridylyltransferase, at 3,035,056 to 3,037,758 _2845 Psest_2846: Psest_2846 - monovalent cation/proton antiporter, MnhG/PhaG subunit, at 3,037,811 to 3,038,140 _2846 Psest_2847: Psest_2847 - Multisubunit Na+/H+ antiporter, MnhF subunit, at 3,038,150 to 3,038,419 _2847 Psest_2848: Psest_2848 - Multisubunit Na+/H+ antiporter, MnhE subunit, at 3,038,404 to 3,038,904 _2848 Psest_2849: Psest_2849 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 3,038,901 to 3,040,400 _2849 Position (kb) 3038 3039Strain fitness (log2 ratio) -2 -1 0 1 2at 3037.882 kb on + strand, within Psest_2846at 3037.882 kb on + strand, within Psest_2846at 3037.882 kb on + strand, within Psest_2846at 3037.882 kb on + strand, within Psest_2846at 3037.883 kb on - strand, within Psest_2846at 3037.883 kb on - strand, within Psest_2846at 3037.883 kb on - strand, within Psest_2846at 3037.997 kb on + strand, within Psest_2846at 3038.120 kb on + strandat 3038.121 kb on - strandat 3038.121 kb on - strandat 3038.161 kb on + strandat 3038.197 kb on + strand, within Psest_2847at 3038.298 kb on + strand, within Psest_2847at 3038.298 kb on + strand, within Psest_2847at 3038.299 kb on - strand, within Psest_2847at 3038.299 kb on - strand, within Psest_2847at 3038.299 kb on - strand, within Psest_2847at 3038.405 kb on + strandat 3038.406 kb on - strandat 3038.409 kb on + strandat 3038.410 kb on - strandat 3038.447 kb on + strandat 3038.447 kb on + strandat 3038.448 kb on - strandat 3038.448 kb on - strandat 3038.448 kb on - strandat 3038.448 kb on - strandat 3038.448 kb on - strandat 3038.448 kb on - strandat 3038.696 kb on + strand, within Psest_2848at 3038.784 kb on + strand, within Psest_2848at 3038.932 kb on + strandat 3038.933 kb on - strandat 3039.327 kb on + strand, within Psest_2849at 3039.327 kb on + strand, within Psest_2849at 3039.327 kb on + strand, within Psest_2849at 3039.328 kb on - strand, within Psest_2849at 3039.328 kb on - strand, within Psest_2849at 3039.328 kb on - strand, within Psest_2849at 3039.403 kb on + strand, within Psest_2849at 3039.407 kb on - strand, within Psest_2849at 3039.407 kb on - strand, within Psest_2849at 3039.407 kb on - strand, within Psest_2849

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3
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3,037,882 + Psest_2846 0.22 -0.6
3,037,882 + Psest_2846 0.22 +0.8
3,037,882 + Psest_2846 0.22 -0.7
3,037,882 + Psest_2846 0.22 -0.0
3,037,883 - Psest_2846 0.22 -0.3
3,037,883 - Psest_2846 0.22 +0.0
3,037,883 - Psest_2846 0.22 +0.4
3,037,997 + Psest_2846 0.56 -1.0
3,038,120 + +0.0
3,038,121 - +0.7
3,038,121 - -0.5
3,038,161 + -0.5
3,038,197 + Psest_2847 0.17 +0.8
3,038,298 + Psest_2847 0.55 +0.1
3,038,298 + Psest_2847 0.55 +0.1
3,038,299 - Psest_2847 0.55 +0.8
3,038,299 - Psest_2847 0.55 +1.9
3,038,299 - Psest_2847 0.55 -0.0
3,038,405 + -0.5
3,038,406 - -1.1
3,038,409 + -0.6
3,038,410 - +0.1
3,038,447 + -0.2
3,038,447 + -0.9
3,038,448 - +1.0
3,038,448 - +0.2
3,038,448 - -2.6
3,038,448 - +0.5
3,038,448 - +0.4
3,038,448 - -0.4
3,038,696 + Psest_2848 0.58 -0.3
3,038,784 + Psest_2848 0.76 -0.3
3,038,932 + +0.4
3,038,933 - +0.0
3,039,327 + Psest_2849 0.28 +0.2
3,039,327 + Psest_2849 0.28 -0.9
3,039,327 + Psest_2849 0.28 +0.9
3,039,328 - Psest_2849 0.28 -0.7
3,039,328 - Psest_2849 0.28 -0.4
3,039,328 - Psest_2849 0.28 -0.4
3,039,403 + Psest_2849 0.33 -0.2
3,039,407 - Psest_2849 0.34 +0.1
3,039,407 - Psest_2849 0.34 +0.1
3,039,407 - Psest_2849 0.34 +0.1

Or see this region's nucleotide sequence