Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2786

Experiment: Anaerobic 50 uM Lead (II) nitrate sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2784 and Psest_2785 are separated by 91 nucleotidesPsest_2785 and Psest_2786 are separated by 172 nucleotidesPsest_2786 and Psest_2787 are separated by 52 nucleotidesPsest_2787 and Psest_2788 are separated by 121 nucleotides Psest_2784: Psest_2784 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 2,978,873 to 2,979,676 _2784 Psest_2785: Psest_2785 - hypothetical protein, at 2,979,768 to 2,979,902 _2785 Psest_2786: Psest_2786 - Domain of unknown function (DUF3597)., at 2,980,075 to 2,980,470 _2786 Psest_2787: Psest_2787 - Protein of unknown function (DUF2789)., at 2,980,523 to 2,980,759 _2787 Psest_2788: Psest_2788 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,980,881 to 2,981,813 _2788 Position (kb) 2980 2981Strain fitness (log2 ratio) -2 -1 0 1at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.094 kb on + strand, within Psest_2784at 2979.094 kb on + strand, within Psest_2784at 2979.094 kb on + strand, within Psest_2784at 2979.094 kb on + strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.258 kb on + strand, within Psest_2784at 2979.394 kb on + strand, within Psest_2784at 2979.709 kb on + strandat 2979.934 kb on + strandat 2979.934 kb on + strandat 2979.934 kb on + strandat 2979.934 kb on + strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2980.033 kb on + strandat 2980.034 kb on - strandat 2980.034 kb on - strandat 2980.149 kb on + strand, within Psest_2786at 2980.747 kb on + strandat 2980.747 kb on + strandat 2980.747 kb on + strandat 2980.748 kb on - strandat 2980.751 kb on + strandat 2980.752 kb on - strandat 2980.752 kb on - strandat 2980.752 kb on - strandat 2980.815 kb on + strandat 2980.846 kb on + strandat 2980.847 kb on - strandat 2980.888 kb on + strandat 2980.888 kb on + strandat 2980.888 kb on + strandat 2980.888 kb on + strandat 2980.888 kb on + strandat 2980.888 kb on + strandat 2980.888 kb on + strandat 2980.888 kb on + strandat 2980.889 kb on - strandat 2980.889 kb on - strandat 2980.889 kb on - strandat 2980.889 kb on - strandat 2980.889 kb on - strandat 2980.889 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3
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2,979,084 + Psest_2784 0.26 +0.7
2,979,084 + Psest_2784 0.26 -0.4
2,979,084 + Psest_2784 0.26 +0.1
2,979,084 + Psest_2784 0.26 +0.8
2,979,084 + Psest_2784 0.26 -1.9
2,979,084 + Psest_2784 0.26 +1.4
2,979,084 + Psest_2784 0.26 -1.9
2,979,084 + Psest_2784 0.26 -0.4
2,979,084 + Psest_2784 0.26 -0.7
2,979,084 + Psest_2784 0.26 +0.4
2,979,084 + Psest_2784 0.26 +0.4
2,979,085 - Psest_2784 0.26 +0.3
2,979,085 - Psest_2784 0.26 -0.4
2,979,085 - Psest_2784 0.26 +0.2
2,979,085 - Psest_2784 0.26 -0.3
2,979,085 - Psest_2784 0.26 -0.1
2,979,085 - Psest_2784 0.26 +0.0
2,979,085 - Psest_2784 0.26 +1.1
2,979,085 - Psest_2784 0.26 -0.1
2,979,085 - Psest_2784 0.26 +0.6
2,979,085 - Psest_2784 0.26 -0.2
2,979,085 - Psest_2784 0.26 +0.1
2,979,085 - Psest_2784 0.26 +0.2
2,979,085 - Psest_2784 0.26 -0.1
2,979,085 - Psest_2784 0.26 +1.3
2,979,085 - Psest_2784 0.26 +0.8
2,979,085 - Psest_2784 0.26 -0.2
2,979,085 - Psest_2784 0.26 +0.3
2,979,094 + Psest_2784 0.27 +1.2
2,979,094 + Psest_2784 0.27 -0.6
2,979,094 + Psest_2784 0.27 +0.3
2,979,094 + Psest_2784 0.27 -0.5
2,979,095 - Psest_2784 0.28 +0.1
2,979,095 - Psest_2784 0.28 +0.6
2,979,095 - Psest_2784 0.28 -0.0
2,979,095 - Psest_2784 0.28 +0.6
2,979,095 - Psest_2784 0.28 -0.6
2,979,095 - Psest_2784 0.28 +0.9
2,979,095 - Psest_2784 0.28 +0.6
2,979,095 - Psest_2784 0.28 +1.1
2,979,095 - Psest_2784 0.28 +0.3
2,979,095 - Psest_2784 0.28 +0.3
2,979,095 - Psest_2784 0.28 -0.2
2,979,258 + Psest_2784 0.48 -0.4
2,979,394 + Psest_2784 0.65 +0.5
2,979,709 + +0.2
2,979,934 + +0.7
2,979,934 + -0.2
2,979,934 + +1.0
2,979,934 + -0.6
2,979,935 - -0.2
2,979,935 - +1.1
2,979,935 - -0.2
2,979,935 - +0.7
2,979,935 - -0.2
2,979,935 - +0.2
2,979,935 - -0.8
2,979,935 - +0.5
2,979,935 - +0.6
2,980,033 + -1.3
2,980,034 - -1.1
2,980,034 - -0.5
2,980,149 + Psest_2786 0.19 +0.7
2,980,747 + -0.9
2,980,747 + +0.3
2,980,747 + -0.4
2,980,748 - -0.5
2,980,751 + -0.7
2,980,752 - -0.3
2,980,752 - -0.4
2,980,752 - -0.3
2,980,815 + -0.1
2,980,846 + -0.3
2,980,847 - -0.2
2,980,888 + +0.5
2,980,888 + -0.0
2,980,888 + -0.2
2,980,888 + -0.5
2,980,888 + +0.4
2,980,888 + -0.2
2,980,888 + -0.4
2,980,888 + -0.7
2,980,889 - +0.3
2,980,889 - +0.2
2,980,889 - +0.3
2,980,889 - +0.4
2,980,889 - +0.5
2,980,889 - +0.4

Or see this region's nucleotide sequence