Experiment: Anaerobic 50 uM Lead (II) nitrate sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1917 and Psest_1918 overlap by 1 nucleotides Psest_1918 and Psest_1919 overlap by 4 nucleotides Psest_1919 and Psest_1920 are separated by 68 nucleotides Psest_1920 and Psest_1921 overlap by 1 nucleotides
Psest_1917: Psest_1917 - Predicted sugar kinase, at 2,024,649 to 2,025,536
_1917
Psest_1918: Psest_1918 - Calcineurin-like phosphoesterase., at 2,025,536 to 2,026,507
_1918
Psest_1919: Psest_1919 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 2,026,504 to 2,027,364
_1919
Psest_1920: Psest_1920 - Uncharacterized protein conserved in bacteria, at 2,027,433 to 2,027,711
_1920
Psest_1921: Psest_1921 - Protein of unknown function (DUF2797)., at 2,027,711 to 2,028,544
_1921
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-1
0
1
2 at 2025.758 kb on + strand, within Psest_1918 at 2025.758 kb on + strand, within Psest_1918 at 2025.758 kb on + strand, within Psest_1918 at 2025.800 kb on + strand, within Psest_1918 at 2025.800 kb on + strand, within Psest_1918 at 2025.800 kb on + strand, within Psest_1918 at 2025.800 kb on + strand, within Psest_1918 at 2025.936 kb on - strand, within Psest_1918 at 2026.123 kb on + strand, within Psest_1918 at 2026.217 kb on + strand, within Psest_1918 at 2026.217 kb on + strand, within Psest_1918 at 2026.217 kb on + strand, within Psest_1918 at 2026.217 kb on + strand, within Psest_1918 at 2026.218 kb on - strand, within Psest_1918 at 2026.397 kb on + strand, within Psest_1918 at 2026.625 kb on + strand, within Psest_1919 at 2026.879 kb on + strand, within Psest_1919 at 2027.083 kb on + strand, within Psest_1919 at 2027.157 kb on - strand, within Psest_1919 at 2027.186 kb on - strand, within Psest_1919 at 2027.479 kb on - strand, within Psest_1920 at 2027.774 kb on + strand at 2028.041 kb on + strand, within Psest_1921 at 2028.041 kb on + strand, within Psest_1921 at 2028.041 kb on + strand, within Psest_1921 at 2028.041 kb on + strand, within Psest_1921 at 2028.041 kb on + strand, within Psest_1921 at 2028.042 kb on - strand, within Psest_1921 at 2028.042 kb on - strand, within Psest_1921 at 2028.229 kb on + strand, within Psest_1921 at 2028.230 kb on - strand, within Psest_1921
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3 remove 2,025,758 + Psest_1918 0.23 -0.2 2,025,758 + Psest_1918 0.23 -0.7 2,025,758 + Psest_1918 0.23 -0.2 2,025,800 + Psest_1918 0.27 -0.4 2,025,800 + Psest_1918 0.27 -0.4 2,025,800 + Psest_1918 0.27 +0.5 2,025,800 + Psest_1918 0.27 +1.3 2,025,936 - Psest_1918 0.41 +0.1 2,026,123 + Psest_1918 0.60 +0.4 2,026,217 + Psest_1918 0.70 +0.3 2,026,217 + Psest_1918 0.70 +0.1 2,026,217 + Psest_1918 0.70 +0.3 2,026,217 + Psest_1918 0.70 -0.3 2,026,218 - Psest_1918 0.70 +0.4 2,026,397 + Psest_1918 0.89 +0.5 2,026,625 + Psest_1919 0.14 -0.1 2,026,879 + Psest_1919 0.44 +0.2 2,027,083 + Psest_1919 0.67 +1.4 2,027,157 - Psest_1919 0.76 +0.2 2,027,186 - Psest_1919 0.79 +0.2 2,027,479 - Psest_1920 0.16 -0.8 2,027,774 + -0.4 2,028,041 + Psest_1921 0.40 +0.6 2,028,041 + Psest_1921 0.40 +0.2 2,028,041 + Psest_1921 0.40 -1.3 2,028,041 + Psest_1921 0.40 -0.5 2,028,041 + Psest_1921 0.40 -0.2 2,028,042 - Psest_1921 0.40 -1.7 2,028,042 - Psest_1921 0.40 +2.3 2,028,229 + Psest_1921 0.62 +0.4 2,028,230 - Psest_1921 0.62 +0.6
Or see this region's nucleotide sequence