Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1782

Experiment: Anaerobic 50 uM Lead (II) nitrate sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1778 and Psest_1779 are separated by 17 nucleotidesPsest_1779 and Psest_1780 are separated by 27 nucleotidesPsest_1780 and Psest_1781 are separated by 2 nucleotidesPsest_1781 and Psest_1782 are separated by 182 nucleotidesPsest_1782 and Psest_1783 overlap by 4 nucleotidesPsest_1783 and Psest_1784 are separated by 2 nucleotidesPsest_1784 and Psest_1785 are separated by 13 nucleotides Psest_1778: Psest_1778 - tRNA_Glu_TTC, at 1,877,996 to 1,878,071 _1778 Psest_1779: Psest_1779 - tRNA_Gly_GCC, at 1,878,089 to 1,878,164 _1779 Psest_1780: Psest_1780 - hypothetical protein, at 1,878,192 to 1,878,371 _1780 Psest_1781: Psest_1781 - Uncharacterized protein conserved in bacteria, at 1,878,374 to 1,878,664 _1781 Psest_1782: Psest_1782 - Predicted transcriptional regulators, at 1,878,847 to 1,879,164 _1782 Psest_1783: Psest_1783 - Predicted transporter component, at 1,879,161 to 1,879,595 _1783 Psest_1784: Psest_1784 - Predicted transporter component, at 1,879,598 to 1,880,017 _1784 Psest_1785: Psest_1785 - Protein of unknown function (DUF2892)., at 1,880,031 to 1,880,228 _1785 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -1 0 1 2at 1877.890 kb on + strandat 1877.890 kb on + strandat 1877.891 kb on - strandat 1877.918 kb on + strandat 1877.918 kb on + strandat 1877.918 kb on + strandat 1877.918 kb on + strandat 1878.081 kb on + strandat 1878.081 kb on + strandat 1878.183 kb on + strandat 1878.381 kb on + strandat 1878.382 kb on - strandat 1878.382 kb on - strandat 1878.676 kb on + strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.729 kb on - strandat 1879.084 kb on + strand, within Psest_1782at 1879.084 kb on + strand, within Psest_1782at 1879.132 kb on + strand, within Psest_1782at 1879.132 kb on + strand, within Psest_1782at 1879.133 kb on - strandat 1879.213 kb on + strand, within Psest_1783at 1879.489 kb on + strand, within Psest_1783at 1879.489 kb on + strand, within Psest_1783at 1879.489 kb on + strand, within Psest_1783at 1879.489 kb on + strand, within Psest_1783at 1879.490 kb on - strand, within Psest_1783at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.069 kb on + strand, within Psest_1785at 1880.069 kb on + strand, within Psest_1785at 1880.070 kb on - strand, within Psest_1785

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3
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1,877,890 + -1.0
1,877,890 + -0.1
1,877,891 - -0.9
1,877,918 + -0.8
1,877,918 + +0.0
1,877,918 + +0.9
1,877,918 + -1.6
1,878,081 + -0.5
1,878,081 + +1.1
1,878,183 + +0.4
1,878,381 + -0.0
1,878,382 - +0.7
1,878,382 - -0.2
1,878,676 + +0.1
1,878,677 - +0.2
1,878,677 - +1.4
1,878,677 - +1.3
1,878,677 - +0.3
1,878,677 - +0.0
1,878,677 - +0.8
1,878,729 - +0.4
1,879,084 + Psest_1782 0.75 -0.3
1,879,084 + Psest_1782 0.75 +1.2
1,879,132 + Psest_1782 0.90 +1.1
1,879,132 + Psest_1782 0.90 +1.3
1,879,133 - -0.2
1,879,213 + Psest_1783 0.12 -0.4
1,879,489 + Psest_1783 0.75 -1.1
1,879,489 + Psest_1783 0.75 +0.2
1,879,489 + Psest_1783 0.75 -1.2
1,879,489 + Psest_1783 0.75 +1.4
1,879,490 - Psest_1783 0.76 +0.9
1,880,065 + Psest_1785 0.17 +1.3
1,880,065 + Psest_1785 0.17 -0.3
1,880,065 + Psest_1785 0.17 +1.8
1,880,065 + Psest_1785 0.17 -0.6
1,880,065 + Psest_1785 0.17 -0.7
1,880,065 + Psest_1785 0.17 -0.2
1,880,065 + Psest_1785 0.17 +0.4
1,880,066 - Psest_1785 0.18 -0.4
1,880,066 - Psest_1785 0.18 +0.3
1,880,066 - Psest_1785 0.18 -0.5
1,880,066 - Psest_1785 0.18 -0.7
1,880,066 - Psest_1785 0.18 +0.3
1,880,066 - Psest_1785 0.18 +0.4
1,880,066 - Psest_1785 0.18 -0.6
1,880,069 + Psest_1785 0.19 -0.2
1,880,069 + Psest_1785 0.19 -0.2
1,880,070 - Psest_1785 0.20 -0.4

Or see this region's nucleotide sequence