Experiment: Anaerobic 50 uM Lead (II) nitrate sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1778 and Psest_1779 are separated by 17 nucleotides Psest_1779 and Psest_1780 are separated by 27 nucleotides Psest_1780 and Psest_1781 are separated by 2 nucleotides Psest_1781 and Psest_1782 are separated by 182 nucleotides Psest_1782 and Psest_1783 overlap by 4 nucleotides Psest_1783 and Psest_1784 are separated by 2 nucleotides Psest_1784 and Psest_1785 are separated by 13 nucleotides
Psest_1778: Psest_1778 - tRNA_Glu_TTC, at 1,877,996 to 1,878,071
_1778
Psest_1779: Psest_1779 - tRNA_Gly_GCC, at 1,878,089 to 1,878,164
_1779
Psest_1780: Psest_1780 - hypothetical protein, at 1,878,192 to 1,878,371
_1780
Psest_1781: Psest_1781 - Uncharacterized protein conserved in bacteria, at 1,878,374 to 1,878,664
_1781
Psest_1782: Psest_1782 - Predicted transcriptional regulators, at 1,878,847 to 1,879,164
_1782
Psest_1783: Psest_1783 - Predicted transporter component, at 1,879,161 to 1,879,595
_1783
Psest_1784: Psest_1784 - Predicted transporter component, at 1,879,598 to 1,880,017
_1784
Psest_1785: Psest_1785 - Protein of unknown function (DUF2892)., at 1,880,031 to 1,880,228
_1785
Position (kb)
1878
1879
1880 Strain fitness (log2 ratio)
-1
0
1
2 at 1877.890 kb on + strand at 1877.890 kb on + strand at 1877.891 kb on - strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1878.081 kb on + strand at 1878.081 kb on + strand at 1878.183 kb on + strand at 1878.381 kb on + strand at 1878.382 kb on - strand at 1878.382 kb on - strand at 1878.676 kb on + strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.729 kb on - strand at 1879.084 kb on + strand, within Psest_1782 at 1879.084 kb on + strand, within Psest_1782 at 1879.132 kb on + strand, within Psest_1782 at 1879.132 kb on + strand, within Psest_1782 at 1879.133 kb on - strand at 1879.213 kb on + strand, within Psest_1783 at 1879.489 kb on + strand, within Psest_1783 at 1879.489 kb on + strand, within Psest_1783 at 1879.489 kb on + strand, within Psest_1783 at 1879.489 kb on + strand, within Psest_1783 at 1879.490 kb on - strand, within Psest_1783 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.069 kb on + strand, within Psest_1785 at 1880.069 kb on + strand, within Psest_1785 at 1880.070 kb on - strand, within Psest_1785
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3 remove 1,877,890 + -1.0 1,877,890 + -0.1 1,877,891 - -0.9 1,877,918 + -0.8 1,877,918 + +0.0 1,877,918 + +0.9 1,877,918 + -1.6 1,878,081 + -0.5 1,878,081 + +1.1 1,878,183 + +0.4 1,878,381 + -0.0 1,878,382 - +0.7 1,878,382 - -0.2 1,878,676 + +0.1 1,878,677 - +0.2 1,878,677 - +1.4 1,878,677 - +1.3 1,878,677 - +0.3 1,878,677 - +0.0 1,878,677 - +0.8 1,878,729 - +0.4 1,879,084 + Psest_1782 0.75 -0.3 1,879,084 + Psest_1782 0.75 +1.2 1,879,132 + Psest_1782 0.90 +1.1 1,879,132 + Psest_1782 0.90 +1.3 1,879,133 - -0.2 1,879,213 + Psest_1783 0.12 -0.4 1,879,489 + Psest_1783 0.75 -1.1 1,879,489 + Psest_1783 0.75 +0.2 1,879,489 + Psest_1783 0.75 -1.2 1,879,489 + Psest_1783 0.75 +1.4 1,879,490 - Psest_1783 0.76 +0.9 1,880,065 + Psest_1785 0.17 +1.3 1,880,065 + Psest_1785 0.17 -0.3 1,880,065 + Psest_1785 0.17 +1.8 1,880,065 + Psest_1785 0.17 -0.6 1,880,065 + Psest_1785 0.17 -0.7 1,880,065 + Psest_1785 0.17 -0.2 1,880,065 + Psest_1785 0.17 +0.4 1,880,066 - Psest_1785 0.18 -0.4 1,880,066 - Psest_1785 0.18 +0.3 1,880,066 - Psest_1785 0.18 -0.5 1,880,066 - Psest_1785 0.18 -0.7 1,880,066 - Psest_1785 0.18 +0.3 1,880,066 - Psest_1785 0.18 +0.4 1,880,066 - Psest_1785 0.18 -0.6 1,880,069 + Psest_1785 0.19 -0.2 1,880,069 + Psest_1785 0.19 -0.2 1,880,070 - Psest_1785 0.20 -0.4
Or see this region's nucleotide sequence