Experiment: Anaerobic 50 uM Lead (II) nitrate sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1649 and Psest_1650 are separated by 186 nucleotides Psest_1650 and Psest_1651 are separated by 142 nucleotides
Psest_1649: Psest_1649 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 1,754,648 to 1,755,661
_1649
Psest_1650: Psest_1650 - hypothetical protein, at 1,755,848 to 1,756,417
_1650
Psest_1651: Psest_1651 - Superfamily II DNA/RNA helicases, SNF2 family, at 1,756,560 to 1,758,890
_1651
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1754.913 kb on + strand, within Psest_1649 at 1755.015 kb on + strand, within Psest_1649 at 1755.015 kb on + strand, within Psest_1649 at 1755.016 kb on - strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.033 kb on + strand, within Psest_1649 at 1755.034 kb on - strand, within Psest_1649 at 1755.034 kb on - strand, within Psest_1649 at 1755.034 kb on - strand, within Psest_1649 at 1755.034 kb on - strand, within Psest_1649 at 1755.211 kb on + strand, within Psest_1649 at 1755.215 kb on + strand, within Psest_1649 at 1755.216 kb on - strand, within Psest_1649 at 1755.216 kb on - strand, within Psest_1649 at 1755.216 kb on - strand, within Psest_1649 at 1755.240 kb on + strand, within Psest_1649 at 1755.240 kb on + strand, within Psest_1649 at 1755.240 kb on + strand, within Psest_1649 at 1755.241 kb on - strand, within Psest_1649 at 1755.330 kb on + strand, within Psest_1649 at 1755.330 kb on + strand, within Psest_1649 at 1755.331 kb on - strand, within Psest_1649 at 1755.363 kb on + strand, within Psest_1649 at 1755.363 kb on + strand, within Psest_1649 at 1755.364 kb on - strand, within Psest_1649 at 1755.450 kb on + strand, within Psest_1649 at 1755.526 kb on - strand, within Psest_1649 at 1755.606 kb on + strand at 1755.606 kb on + strand at 1755.627 kb on + strand at 1755.627 kb on + strand at 1755.665 kb on + strand at 1755.666 kb on - strand at 1755.686 kb on + strand at 1755.687 kb on - strand at 1755.687 kb on - strand at 1755.687 kb on - strand at 1755.785 kb on + strand at 1755.785 kb on + strand at 1755.787 kb on + strand at 1755.787 kb on + strand at 1755.787 kb on + strand at 1755.787 kb on + strand at 1755.787 kb on + strand at 1755.787 kb on + strand at 1755.787 kb on + strand at 1755.788 kb on - strand at 1755.788 kb on - strand at 1755.788 kb on - strand at 1755.788 kb on - strand at 1755.788 kb on - strand at 1755.788 kb on - strand at 1755.788 kb on - strand at 1756.056 kb on + strand, within Psest_1650 at 1756.056 kb on + strand, within Psest_1650 at 1756.056 kb on + strand, within Psest_1650 at 1756.056 kb on + strand, within Psest_1650 at 1756.056 kb on + strand, within Psest_1650 at 1756.056 kb on + strand, within Psest_1650 at 1756.056 kb on + strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.057 kb on - strand, within Psest_1650 at 1756.208 kb on + strand, within Psest_1650 at 1756.208 kb on + strand, within Psest_1650 at 1756.939 kb on + strand, within Psest_1651 at 1756.939 kb on + strand, within Psest_1651 at 1756.939 kb on + strand, within Psest_1651 at 1756.940 kb on - strand, within Psest_1651 at 1756.940 kb on - strand, within Psest_1651 at 1757.410 kb on + strand, within Psest_1651
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3 remove 1,754,913 + Psest_1649 0.26 -1.4 1,755,015 + Psest_1649 0.36 -0.6 1,755,015 + Psest_1649 0.36 -0.6 1,755,016 - Psest_1649 0.36 -0.1 1,755,033 + Psest_1649 0.38 -0.2 1,755,033 + Psest_1649 0.38 -1.0 1,755,033 + Psest_1649 0.38 +0.2 1,755,033 + Psest_1649 0.38 -0.5 1,755,033 + Psest_1649 0.38 +0.8 1,755,033 + Psest_1649 0.38 +0.5 1,755,033 + Psest_1649 0.38 -0.1 1,755,033 + Psest_1649 0.38 -2.1 1,755,033 + Psest_1649 0.38 +0.1 1,755,034 - Psest_1649 0.38 -0.1 1,755,034 - Psest_1649 0.38 +0.1 1,755,034 - Psest_1649 0.38 -0.6 1,755,034 - Psest_1649 0.38 +0.5 1,755,211 + Psest_1649 0.56 +0.3 1,755,215 + Psest_1649 0.56 +0.3 1,755,216 - Psest_1649 0.56 +0.4 1,755,216 - Psest_1649 0.56 -0.1 1,755,216 - Psest_1649 0.56 -0.7 1,755,240 + Psest_1649 0.58 -0.1 1,755,240 + Psest_1649 0.58 -0.4 1,755,240 + Psest_1649 0.58 +0.5 1,755,241 - Psest_1649 0.58 -1.1 1,755,330 + Psest_1649 0.67 -0.2 1,755,330 + Psest_1649 0.67 -0.2 1,755,331 - Psest_1649 0.67 +0.4 1,755,363 + Psest_1649 0.71 -0.1 1,755,363 + Psest_1649 0.71 +0.2 1,755,364 - Psest_1649 0.71 +0.2 1,755,450 + Psest_1649 0.79 +0.6 1,755,526 - Psest_1649 0.87 +0.9 1,755,606 + +0.2 1,755,606 + -0.4 1,755,627 + +0.2 1,755,627 + +0.7 1,755,665 + +0.7 1,755,666 - +0.5 1,755,686 + -0.2 1,755,687 - +0.8 1,755,687 - +0.1 1,755,687 - -0.0 1,755,785 + +0.2 1,755,785 + -0.1 1,755,787 + +0.2 1,755,787 + +0.1 1,755,787 + -0.3 1,755,787 + -0.1 1,755,787 + +0.1 1,755,787 + -0.4 1,755,787 + +0.4 1,755,788 - +0.3 1,755,788 - +0.1 1,755,788 - +0.5 1,755,788 - +0.1 1,755,788 - +0.6 1,755,788 - -0.5 1,755,788 - +0.4 1,756,056 + Psest_1650 0.36 -0.3 1,756,056 + Psest_1650 0.36 +0.0 1,756,056 + Psest_1650 0.36 +1.4 1,756,056 + Psest_1650 0.36 -0.0 1,756,056 + Psest_1650 0.36 +1.3 1,756,056 + Psest_1650 0.36 +3.3 1,756,056 + Psest_1650 0.36 -0.7 1,756,057 - Psest_1650 0.37 +1.1 1,756,057 - Psest_1650 0.37 +0.3 1,756,057 - Psest_1650 0.37 +0.3 1,756,057 - Psest_1650 0.37 +0.6 1,756,057 - Psest_1650 0.37 +0.4 1,756,057 - Psest_1650 0.37 +0.3 1,756,057 - Psest_1650 0.37 +0.5 1,756,057 - Psest_1650 0.37 +0.5 1,756,057 - Psest_1650 0.37 +0.0 1,756,057 - Psest_1650 0.37 -0.1 1,756,208 + Psest_1650 0.63 +1.3 1,756,208 + Psest_1650 0.63 -0.2 1,756,939 + Psest_1651 0.16 -0.4 1,756,939 + Psest_1651 0.16 +0.2 1,756,939 + Psest_1651 0.16 -0.4 1,756,940 - Psest_1651 0.16 +0.0 1,756,940 - Psest_1651 0.16 +0.1 1,757,410 + Psest_1651 0.36 -0.3
Or see this region's nucleotide sequence