Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1650

Experiment: Anaerobic 50 uM Lead (II) nitrate sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1649 and Psest_1650 are separated by 186 nucleotidesPsest_1650 and Psest_1651 are separated by 142 nucleotides Psest_1649: Psest_1649 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 1,754,648 to 1,755,661 _1649 Psest_1650: Psest_1650 - hypothetical protein, at 1,755,848 to 1,756,417 _1650 Psest_1651: Psest_1651 - Superfamily II DNA/RNA helicases, SNF2 family, at 1,756,560 to 1,758,890 _1651 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1754.913 kb on + strand, within Psest_1649at 1755.015 kb on + strand, within Psest_1649at 1755.015 kb on + strand, within Psest_1649at 1755.016 kb on - strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.033 kb on + strand, within Psest_1649at 1755.034 kb on - strand, within Psest_1649at 1755.034 kb on - strand, within Psest_1649at 1755.034 kb on - strand, within Psest_1649at 1755.034 kb on - strand, within Psest_1649at 1755.211 kb on + strand, within Psest_1649at 1755.215 kb on + strand, within Psest_1649at 1755.216 kb on - strand, within Psest_1649at 1755.216 kb on - strand, within Psest_1649at 1755.216 kb on - strand, within Psest_1649at 1755.240 kb on + strand, within Psest_1649at 1755.240 kb on + strand, within Psest_1649at 1755.240 kb on + strand, within Psest_1649at 1755.241 kb on - strand, within Psest_1649at 1755.330 kb on + strand, within Psest_1649at 1755.330 kb on + strand, within Psest_1649at 1755.331 kb on - strand, within Psest_1649at 1755.363 kb on + strand, within Psest_1649at 1755.363 kb on + strand, within Psest_1649at 1755.364 kb on - strand, within Psest_1649at 1755.450 kb on + strand, within Psest_1649at 1755.526 kb on - strand, within Psest_1649at 1755.606 kb on + strandat 1755.606 kb on + strandat 1755.627 kb on + strandat 1755.627 kb on + strandat 1755.665 kb on + strandat 1755.666 kb on - strandat 1755.686 kb on + strandat 1755.687 kb on - strandat 1755.687 kb on - strandat 1755.687 kb on - strandat 1755.785 kb on + strandat 1755.785 kb on + strandat 1755.787 kb on + strandat 1755.787 kb on + strandat 1755.787 kb on + strandat 1755.787 kb on + strandat 1755.787 kb on + strandat 1755.787 kb on + strandat 1755.787 kb on + strandat 1755.788 kb on - strandat 1755.788 kb on - strandat 1755.788 kb on - strandat 1755.788 kb on - strandat 1755.788 kb on - strandat 1755.788 kb on - strandat 1755.788 kb on - strandat 1756.056 kb on + strand, within Psest_1650at 1756.056 kb on + strand, within Psest_1650at 1756.056 kb on + strand, within Psest_1650at 1756.056 kb on + strand, within Psest_1650at 1756.056 kb on + strand, within Psest_1650at 1756.056 kb on + strand, within Psest_1650at 1756.056 kb on + strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.057 kb on - strand, within Psest_1650at 1756.208 kb on + strand, within Psest_1650at 1756.208 kb on + strand, within Psest_1650at 1756.939 kb on + strand, within Psest_1651at 1756.939 kb on + strand, within Psest_1651at 1756.939 kb on + strand, within Psest_1651at 1756.940 kb on - strand, within Psest_1651at 1756.940 kb on - strand, within Psest_1651at 1757.410 kb on + strand, within Psest_1651

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3
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1,754,913 + Psest_1649 0.26 -1.4
1,755,015 + Psest_1649 0.36 -0.6
1,755,015 + Psest_1649 0.36 -0.6
1,755,016 - Psest_1649 0.36 -0.1
1,755,033 + Psest_1649 0.38 -0.2
1,755,033 + Psest_1649 0.38 -1.0
1,755,033 + Psest_1649 0.38 +0.2
1,755,033 + Psest_1649 0.38 -0.5
1,755,033 + Psest_1649 0.38 +0.8
1,755,033 + Psest_1649 0.38 +0.5
1,755,033 + Psest_1649 0.38 -0.1
1,755,033 + Psest_1649 0.38 -2.1
1,755,033 + Psest_1649 0.38 +0.1
1,755,034 - Psest_1649 0.38 -0.1
1,755,034 - Psest_1649 0.38 +0.1
1,755,034 - Psest_1649 0.38 -0.6
1,755,034 - Psest_1649 0.38 +0.5
1,755,211 + Psest_1649 0.56 +0.3
1,755,215 + Psest_1649 0.56 +0.3
1,755,216 - Psest_1649 0.56 +0.4
1,755,216 - Psest_1649 0.56 -0.1
1,755,216 - Psest_1649 0.56 -0.7
1,755,240 + Psest_1649 0.58 -0.1
1,755,240 + Psest_1649 0.58 -0.4
1,755,240 + Psest_1649 0.58 +0.5
1,755,241 - Psest_1649 0.58 -1.1
1,755,330 + Psest_1649 0.67 -0.2
1,755,330 + Psest_1649 0.67 -0.2
1,755,331 - Psest_1649 0.67 +0.4
1,755,363 + Psest_1649 0.71 -0.1
1,755,363 + Psest_1649 0.71 +0.2
1,755,364 - Psest_1649 0.71 +0.2
1,755,450 + Psest_1649 0.79 +0.6
1,755,526 - Psest_1649 0.87 +0.9
1,755,606 + +0.2
1,755,606 + -0.4
1,755,627 + +0.2
1,755,627 + +0.7
1,755,665 + +0.7
1,755,666 - +0.5
1,755,686 + -0.2
1,755,687 - +0.8
1,755,687 - +0.1
1,755,687 - -0.0
1,755,785 + +0.2
1,755,785 + -0.1
1,755,787 + +0.2
1,755,787 + +0.1
1,755,787 + -0.3
1,755,787 + -0.1
1,755,787 + +0.1
1,755,787 + -0.4
1,755,787 + +0.4
1,755,788 - +0.3
1,755,788 - +0.1
1,755,788 - +0.5
1,755,788 - +0.1
1,755,788 - +0.6
1,755,788 - -0.5
1,755,788 - +0.4
1,756,056 + Psest_1650 0.36 -0.3
1,756,056 + Psest_1650 0.36 +0.0
1,756,056 + Psest_1650 0.36 +1.4
1,756,056 + Psest_1650 0.36 -0.0
1,756,056 + Psest_1650 0.36 +1.3
1,756,056 + Psest_1650 0.36 +3.3
1,756,056 + Psest_1650 0.36 -0.7
1,756,057 - Psest_1650 0.37 +1.1
1,756,057 - Psest_1650 0.37 +0.3
1,756,057 - Psest_1650 0.37 +0.3
1,756,057 - Psest_1650 0.37 +0.6
1,756,057 - Psest_1650 0.37 +0.4
1,756,057 - Psest_1650 0.37 +0.3
1,756,057 - Psest_1650 0.37 +0.5
1,756,057 - Psest_1650 0.37 +0.5
1,756,057 - Psest_1650 0.37 +0.0
1,756,057 - Psest_1650 0.37 -0.1
1,756,208 + Psest_1650 0.63 +1.3
1,756,208 + Psest_1650 0.63 -0.2
1,756,939 + Psest_1651 0.16 -0.4
1,756,939 + Psest_1651 0.16 +0.2
1,756,939 + Psest_1651 0.16 -0.4
1,756,940 - Psest_1651 0.16 +0.0
1,756,940 - Psest_1651 0.16 +0.1
1,757,410 + Psest_1651 0.36 -0.3

Or see this region's nucleotide sequence