Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1524

Experiment: Anaerobic 50 uM Lead (II) nitrate sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1523 and Psest_1524 are separated by 442 nucleotidesPsest_1524 and Psest_1525 are separated by 62 nucleotides Psest_1523: Psest_1523 - Dicarboxylate transport., at 1,620,783 to 1,623,344 _1523 Psest_1524: Psest_1524 - Sel1 repeat., at 1,623,787 to 1,624,239 _1524 Psest_1525: Psest_1525 - Uncharacterized protein conserved in bacteria, at 1,624,302 to 1,625,774 _1525 Position (kb) 1623 1624 1625Strain fitness (log2 ratio) -1 0 1at 1622.944 kb on - strand, within Psest_1523at 1623.133 kb on - strandat 1623.133 kb on - strandat 1623.300 kb on + strandat 1623.358 kb on - strandat 1623.368 kb on + strandat 1623.368 kb on + strandat 1623.369 kb on - strandat 1623.375 kb on + strandat 1623.375 kb on + strandat 1623.375 kb on + strandat 1623.375 kb on + strandat 1623.375 kb on + strandat 1623.375 kb on + strandat 1623.376 kb on - strandat 1623.376 kb on - strandat 1623.376 kb on - strandat 1623.541 kb on - strandat 1623.541 kb on - strandat 1623.715 kb on - strandat 1623.763 kb on + strandat 1623.763 kb on + strandat 1623.783 kb on + strandat 1623.783 kb on + strandat 1623.834 kb on + strand, within Psest_1524at 1623.859 kb on - strand, within Psest_1524at 1623.859 kb on - strand, within Psest_1524at 1623.859 kb on - strand, within Psest_1524at 1623.992 kb on + strand, within Psest_1524at 1624.118 kb on + strand, within Psest_1524at 1624.270 kb on + strandat 1624.271 kb on - strandat 1624.272 kb on + strandat 1624.273 kb on - strandat 1624.324 kb on + strandat 1624.324 kb on + strandat 1624.324 kb on + strandat 1624.324 kb on + strandat 1624.324 kb on + strandat 1624.325 kb on - strandat 1624.325 kb on - strandat 1624.514 kb on - strand, within Psest_1525at 1624.514 kb on - strand, within Psest_1525at 1624.514 kb on - strand, within Psest_1525at 1624.514 kb on - strand, within Psest_1525at 1624.859 kb on + strand, within Psest_1525at 1625.152 kb on + strand, within Psest_1525at 1625.153 kb on - strand, within Psest_1525at 1625.231 kb on + strand, within Psest_1525

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 50 uM Lead (II) nitrate sample3
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1,622,944 - Psest_1523 0.84 -0.9
1,623,133 - +0.5
1,623,133 - +0.8
1,623,300 + -0.1
1,623,358 - -1.6
1,623,368 + +0.2
1,623,368 + +0.0
1,623,369 - -0.1
1,623,375 + +0.5
1,623,375 + -0.2
1,623,375 + +0.4
1,623,375 + +0.9
1,623,375 + +0.5
1,623,375 + +0.5
1,623,376 - +0.6
1,623,376 - -0.1
1,623,376 - +0.4
1,623,541 - +0.4
1,623,541 - +0.1
1,623,715 - +0.2
1,623,763 + -0.7
1,623,763 + +0.3
1,623,783 + +0.2
1,623,783 + +0.2
1,623,834 + Psest_1524 0.10 -0.3
1,623,859 - Psest_1524 0.16 +0.6
1,623,859 - Psest_1524 0.16 +0.3
1,623,859 - Psest_1524 0.16 +0.1
1,623,992 + Psest_1524 0.45 +0.1
1,624,118 + Psest_1524 0.73 +1.2
1,624,270 + -0.4
1,624,271 - +1.1
1,624,272 + -0.2
1,624,273 - +0.2
1,624,324 + +0.5
1,624,324 + -0.3
1,624,324 + -0.8
1,624,324 + +0.8
1,624,324 + -0.8
1,624,325 - -0.0
1,624,325 - -0.2
1,624,514 - Psest_1525 0.14 +0.8
1,624,514 - Psest_1525 0.14 +0.5
1,624,514 - Psest_1525 0.14 +0.1
1,624,514 - Psest_1525 0.14 +0.2
1,624,859 + Psest_1525 0.38 -0.2
1,625,152 + Psest_1525 0.58 +0.6
1,625,153 - Psest_1525 0.58 +0.1
1,625,231 + Psest_1525 0.63 +0.0

Or see this region's nucleotide sequence