Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0612 and Psest_0613 are separated by 400 nucleotides Psest_0613 and Psest_0614 are separated by 58 nucleotides
Psest_0612: Psest_0612 - outer membrane porin, OprD family., at 661,933 to 663,252
_0612
Psest_0613: Psest_0613 - hypothetical protein, at 663,653 to 664,033
_0613
Psest_0614: Psest_0614 - Outer membrane protein, at 664,092 to 665,399
_0614
Position (kb) 663
664
665 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 662.673 kb on + strand, within Psest_0612 at 662.673 kb on + strand, within Psest_0612 at 662.808 kb on + strand, within Psest_0612 at 662.809 kb on - strand, within Psest_0612 at 662.818 kb on + strand, within Psest_0612 at 662.818 kb on + strand, within Psest_0612 at 662.818 kb on + strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 663.021 kb on + strand, within Psest_0612 at 663.021 kb on + strand, within Psest_0612 at 663.021 kb on + strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.120 kb on - strand, within Psest_0612 at 663.133 kb on + strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.270 kb on - strand at 663.270 kb on - strand at 663.270 kb on - strand at 663.422 kb on + strand at 663.455 kb on + strand at 663.456 kb on - strand at 663.456 kb on - strand at 663.459 kb on + strand at 663.486 kb on + strand at 663.486 kb on + strand at 663.527 kb on + strand at 663.528 kb on - strand at 663.528 kb on - strand at 663.599 kb on - strand at 663.605 kb on + strand at 663.605 kb on + strand at 663.605 kb on + strand at 663.606 kb on - strand at 663.606 kb on - strand at 663.624 kb on + strand at 663.625 kb on - strand at 663.625 kb on - strand at 663.625 kb on - strand at 663.681 kb on + strand at 663.883 kb on + strand, within Psest_0613 at 663.883 kb on + strand, within Psest_0613 at 663.883 kb on + strand, within Psest_0613 at 663.884 kb on - strand, within Psest_0613 at 663.885 kb on + strand, within Psest_0613 at 663.885 kb on + strand, within Psest_0613 at 663.885 kb on + strand, within Psest_0613 at 663.886 kb on - strand, within Psest_0613 at 663.886 kb on - strand, within Psest_0613 at 663.913 kb on - strand, within Psest_0613 at 663.915 kb on + strand, within Psest_0613 at 663.947 kb on - strand, within Psest_0613 at 663.947 kb on - strand, within Psest_0613 at 663.947 kb on - strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.951 kb on - strand, within Psest_0613 at 663.951 kb on - strand, within Psest_0613 at 663.985 kb on + strand, within Psest_0613 at 663.986 kb on - strand, within Psest_0613 at 663.986 kb on - strand, within Psest_0613 at 663.986 kb on - strand, within Psest_0613 at 664.025 kb on - strand at 664.025 kb on - strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.049 kb on - strand at 664.186 kb on + strand at 664.186 kb on + strand at 664.186 kb on + strand at 664.187 kb on - strand at 664.187 kb on - strand at 664.187 kb on - strand at 664.187 kb on - strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.206 kb on - strand at 664.206 kb on - strand at 664.206 kb on - strand at 664.206 kb on - strand at 664.206 kb on - strand at 664.234 kb on + strand, within Psest_0614 at 664.235 kb on - strand, within Psest_0614 at 664.243 kb on + strand, within Psest_0614 at 664.243 kb on + strand, within Psest_0614 at 664.321 kb on + strand, within Psest_0614 at 664.321 kb on + strand, within Psest_0614 at 664.321 kb on + strand, within Psest_0614 at 664.321 kb on + strand, within Psest_0614 at 664.322 kb on - strand, within Psest_0614 at 664.322 kb on - strand, within Psest_0614 at 664.325 kb on + strand, within Psest_0614 at 664.325 kb on + strand, within Psest_0614 at 664.354 kb on + strand, within Psest_0614 at 664.480 kb on + strand, within Psest_0614 at 664.481 kb on - strand, within Psest_0614 at 664.481 kb on - strand, within Psest_0614 at 664.481 kb on - strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.496 kb on - strand, within Psest_0614 at 664.540 kb on - strand, within Psest_0614 at 664.542 kb on + strand, within Psest_0614 at 664.542 kb on + strand, within Psest_0614 at 664.542 kb on + strand, within Psest_0614 at 664.542 kb on + strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.553 kb on + strand, within Psest_0614 at 664.554 kb on - strand, within Psest_0614 at 664.554 kb on - strand, within Psest_0614 at 664.699 kb on + strand, within Psest_0614 at 664.699 kb on + strand, within Psest_0614 at 664.699 kb on + strand, within Psest_0614 at 664.700 kb on - strand, within Psest_0614 at 664.789 kb on + strand, within Psest_0614 at 664.789 kb on + strand, within Psest_0614 at 664.789 kb on + strand, within Psest_0614 at 664.789 kb on + strand, within Psest_0614 at 664.790 kb on - strand, within Psest_0614 at 664.828 kb on + strand, within Psest_0614 at 664.828 kb on + strand, within Psest_0614 at 664.829 kb on - strand, within Psest_0614 at 664.839 kb on + strand, within Psest_0614 at 664.840 kb on - strand, within Psest_0614 at 664.840 kb on - strand, within Psest_0614 at 664.909 kb on + strand, within Psest_0614 at 664.937 kb on + strand, within Psest_0614 at 664.938 kb on - strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.980 kb on - strand, within Psest_0614 at 664.980 kb on - strand, within Psest_0614 at 664.980 kb on - strand, within Psest_0614 at 665.003 kb on + strand, within Psest_0614 at 665.003 kb on + strand, within Psest_0614 at 665.004 kb on - strand, within Psest_0614 at 665.004 kb on - strand, within Psest_0614 at 665.004 kb on - strand, within Psest_0614
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 662,673 + Psest_0612 0.56 -0.1 662,673 + Psest_0612 0.56 -0.1 662,808 + Psest_0612 0.66 -0.4 662,809 - Psest_0612 0.66 +0.2 662,818 + Psest_0612 0.67 +1.8 662,818 + Psest_0612 0.67 -0.7 662,818 + Psest_0612 0.67 -1.2 662,819 - Psest_0612 0.67 +2.8 662,819 - Psest_0612 0.67 +0.2 662,819 - Psest_0612 0.67 +1.0 662,819 - Psest_0612 0.67 -0.2 662,819 - Psest_0612 0.67 +0.5 663,021 + Psest_0612 0.82 -0.4 663,021 + Psest_0612 0.82 -0.0 663,021 + Psest_0612 0.82 +0.7 663,022 - Psest_0612 0.82 -0.3 663,022 - Psest_0612 0.82 -0.5 663,022 - Psest_0612 0.82 -0.0 663,022 - Psest_0612 0.82 -0.4 663,022 - Psest_0612 0.82 -0.7 663,120 - Psest_0612 0.90 -0.3 663,133 + -0.6 663,266 - +0.7 663,266 - +0.0 663,266 - +0.4 663,266 - -1.1 663,266 - +0.3 663,266 - -0.2 663,266 - +1.0 663,270 - +2.2 663,270 - -0.0 663,270 - +0.2 663,422 + -2.8 663,455 + -1.2 663,456 - -4.1 663,456 - -4.5 663,459 + -1.4 663,486 + -3.5 663,486 + +0.1 663,527 + +0.3 663,528 - -2.0 663,528 - -5.1 663,599 - -3.3 663,605 + -0.3 663,605 + +0.1 663,605 + -0.4 663,606 - +0.4 663,606 - -3.6 663,624 + +0.3 663,625 - -1.9 663,625 - +0.2 663,625 - -2.7 663,681 + +0.7 663,883 + Psest_0613 0.60 -3.6 663,883 + Psest_0613 0.60 -4.3 663,883 + Psest_0613 0.60 -2.0 663,884 - Psest_0613 0.61 -3.0 663,885 + Psest_0613 0.61 -2.1 663,885 + Psest_0613 0.61 -3.9 663,885 + Psest_0613 0.61 -2.0 663,886 - Psest_0613 0.61 -1.8 663,886 - Psest_0613 0.61 -2.1 663,913 - Psest_0613 0.68 -2.9 663,915 + Psest_0613 0.69 -5.0 663,947 - Psest_0613 0.77 -3.2 663,947 - Psest_0613 0.77 -1.3 663,947 - Psest_0613 0.77 -2.2 663,950 + Psest_0613 0.78 -2.0 663,950 + Psest_0613 0.78 -3.3 663,950 + Psest_0613 0.78 -3.8 663,950 + Psest_0613 0.78 -3.7 663,950 + Psest_0613 0.78 -2.6 663,951 - Psest_0613 0.78 -2.2 663,951 - Psest_0613 0.78 -4.5 663,985 + Psest_0613 0.87 -2.3 663,986 - Psest_0613 0.87 -2.6 663,986 - Psest_0613 0.87 -3.3 663,986 - Psest_0613 0.87 -1.6 664,025 - -3.3 664,025 - -3.6 664,042 + -3.0 664,042 + -1.8 664,042 + -2.8 664,042 + -3.1 664,042 + -3.2 664,042 + -1.0 664,042 + -3.8 664,043 - -3.5 664,043 - -3.2 664,043 - -4.7 664,043 - -3.3 664,043 - -3.3 664,043 - -4.3 664,043 - -4.0 664,043 - -2.2 664,043 - -1.9 664,043 - -2.0 664,043 - -4.1 664,049 - -3.4 664,186 + -2.8 664,186 + -2.0 664,186 + -3.3 664,187 - -3.2 664,187 - -0.6 664,187 - -4.8 664,187 - -3.8 664,205 + -0.4 664,205 + -3.0 664,205 + -3.0 664,205 + -3.8 664,205 + -4.6 664,205 + -1.5 664,205 + -3.2 664,205 + -1.7 664,205 + -2.6 664,205 + -3.5 664,205 + -4.6 664,205 + -2.8 664,205 + -1.6 664,206 - -2.4 664,206 - -3.0 664,206 - -1.3 664,206 - -4.2 664,206 - -3.2 664,234 + Psest_0614 0.11 -3.0 664,235 - Psest_0614 0.11 -2.4 664,243 + Psest_0614 0.12 -2.5 664,243 + Psest_0614 0.12 -3.8 664,321 + Psest_0614 0.18 -2.2 664,321 + Psest_0614 0.18 -3.4 664,321 + Psest_0614 0.18 -1.9 664,321 + Psest_0614 0.18 -0.7 664,322 - Psest_0614 0.18 -1.8 664,322 - Psest_0614 0.18 -3.0 664,325 + Psest_0614 0.18 -4.3 664,325 + Psest_0614 0.18 -3.3 664,354 + Psest_0614 0.20 -0.6 664,480 + Psest_0614 0.30 -2.4 664,481 - Psest_0614 0.30 -4.7 664,481 - Psest_0614 0.30 -1.4 664,481 - Psest_0614 0.30 -0.8 664,495 + Psest_0614 0.31 -3.4 664,495 + Psest_0614 0.31 +0.2 664,495 + Psest_0614 0.31 -2.3 664,495 + Psest_0614 0.31 -2.5 664,495 + Psest_0614 0.31 -0.3 664,496 - Psest_0614 0.31 -2.8 664,540 - Psest_0614 0.34 -2.7 664,542 + Psest_0614 0.34 -2.5 664,542 + Psest_0614 0.34 -2.8 664,542 + Psest_0614 0.34 -2.7 664,542 + Psest_0614 0.34 -3.3 664,543 - Psest_0614 0.34 -2.0 664,543 - Psest_0614 0.34 +0.7 664,543 - Psest_0614 0.34 -2.4 664,543 - Psest_0614 0.34 -2.5 664,543 - Psest_0614 0.34 -2.6 664,543 - Psest_0614 0.34 -3.3 664,553 + Psest_0614 0.35 -2.8 664,554 - Psest_0614 0.35 -2.8 664,554 - Psest_0614 0.35 -0.1 664,699 + Psest_0614 0.46 -2.9 664,699 + Psest_0614 0.46 -4.2 664,699 + Psest_0614 0.46 -2.2 664,700 - Psest_0614 0.46 -4.2 664,789 + Psest_0614 0.53 -2.9 664,789 + Psest_0614 0.53 -2.7 664,789 + Psest_0614 0.53 -2.6 664,789 + Psest_0614 0.53 -0.6 664,790 - Psest_0614 0.53 -3.3 664,828 + Psest_0614 0.56 -0.3 664,828 + Psest_0614 0.56 -2.5 664,829 - Psest_0614 0.56 -4.2 664,839 + Psest_0614 0.57 -1.6 664,840 - Psest_0614 0.57 -2.2 664,840 - Psest_0614 0.57 +0.7 664,909 + Psest_0614 0.62 -3.0 664,937 + Psest_0614 0.65 -2.9 664,938 - Psest_0614 0.65 -2.8 664,954 + Psest_0614 0.66 -3.1 664,954 + Psest_0614 0.66 -3.6 664,954 + Psest_0614 0.66 -1.3 664,954 + Psest_0614 0.66 -3.5 664,954 + Psest_0614 0.66 -2.5 664,954 + Psest_0614 0.66 -3.0 664,955 - Psest_0614 0.66 -2.3 664,955 - Psest_0614 0.66 -5.7 664,955 - Psest_0614 0.66 -3.0 664,955 - Psest_0614 0.66 -3.5 664,955 - Psest_0614 0.66 -4.4 664,977 + Psest_0614 0.68 -3.0 664,977 + Psest_0614 0.68 -3.5 664,977 + Psest_0614 0.68 -4.0 664,977 + Psest_0614 0.68 -3.1 664,977 + Psest_0614 0.68 -0.6 664,977 + Psest_0614 0.68 -1.8 664,977 + Psest_0614 0.68 -2.9 664,977 + Psest_0614 0.68 -3.8 664,977 + Psest_0614 0.68 -3.1 664,977 + Psest_0614 0.68 -2.7 664,977 + Psest_0614 0.68 -0.6 664,978 - Psest_0614 0.68 -3.5 664,978 - Psest_0614 0.68 -1.1 664,978 - Psest_0614 0.68 -0.3 664,978 - Psest_0614 0.68 -0.3 664,978 - Psest_0614 0.68 -3.1 664,978 - Psest_0614 0.68 -1.6 664,980 - Psest_0614 0.68 -1.1 664,980 - Psest_0614 0.68 -3.3 664,980 - Psest_0614 0.68 -4.9 665,003 + Psest_0614 0.70 -0.8 665,003 + Psest_0614 0.70 +0.2 665,004 - Psest_0614 0.70 -3.9 665,004 - Psest_0614 0.70 -2.5 665,004 - Psest_0614 0.70 -3.4
Or see this region's nucleotide sequence