Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4307

Experiment: Anaerobic 500 uM Zinc chloride sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4306 and Psest_4307 are separated by 53 nucleotidesPsest_4307 and Psest_4308 are separated by 58 nucleotidesPsest_4308 and Psest_4309 overlap by 4 nucleotides Psest_4306: Psest_4306 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 4,505,121 to 4,506,446 _4306 Psest_4307: Psest_4307 - ABC-type Zn2+ transport system, periplasmic component/surface adhesin, at 4,506,500 to 4,507,531 _4307 Psest_4308: Psest_4308 - Fe2+/Zn2+ uptake regulation proteins, at 4,507,590 to 4,508,075 _4308 Psest_4309: Psest_4309 - ABC-type Mn/Zn transport systems, ATPase component, at 4,508,072 to 4,508,842 _4309 Position (kb) 4506 4507 4508Strain fitness (log2 ratio) -1 0 1at 4505.657 kb on + strand, within Psest_4306at 4505.657 kb on + strand, within Psest_4306at 4506.076 kb on - strand, within Psest_4306at 4506.081 kb on + strand, within Psest_4306at 4506.081 kb on + strand, within Psest_4306at 4506.081 kb on + strand, within Psest_4306at 4506.082 kb on - strand, within Psest_4306at 4506.082 kb on - strand, within Psest_4306at 4506.082 kb on - strand, within Psest_4306at 4506.082 kb on - strand, within Psest_4306at 4506.082 kb on - strand, within Psest_4306at 4506.082 kb on - strand, within Psest_4306at 4506.132 kb on + strand, within Psest_4306at 4506.132 kb on + strand, within Psest_4306at 4506.132 kb on + strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.133 kb on - strand, within Psest_4306at 4506.338 kb on - strandat 4506.428 kb on + strandat 4506.429 kb on - strandat 4506.805 kb on - strand, within Psest_4307at 4506.805 kb on - strand, within Psest_4307at 4507.237 kb on + strand, within Psest_4307at 4507.238 kb on - strand, within Psest_4307at 4507.238 kb on - strand, within Psest_4307at 4507.297 kb on - strand, within Psest_4307at 4507.325 kb on + strand, within Psest_4307at 4507.326 kb on - strand, within Psest_4307at 4507.348 kb on - strand, within Psest_4307at 4507.512 kb on + strandat 4507.513 kb on - strandat 4507.554 kb on - strandat 4507.557 kb on + strandat 4507.557 kb on + strandat 4507.557 kb on + strandat 4507.557 kb on + strandat 4507.557 kb on + strandat 4507.557 kb on + strandat 4507.558 kb on - strandat 4507.558 kb on - strandat 4507.558 kb on - strandat 4508.082 kb on + strandat 4508.082 kb on + strandat 4508.082 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2
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4,505,657 + Psest_4306 0.40 -0.3
4,505,657 + Psest_4306 0.40 +0.7
4,506,076 - Psest_4306 0.72 -0.4
4,506,081 + Psest_4306 0.72 +0.5
4,506,081 + Psest_4306 0.72 +0.6
4,506,081 + Psest_4306 0.72 -0.2
4,506,082 - Psest_4306 0.72 +0.2
4,506,082 - Psest_4306 0.72 +0.4
4,506,082 - Psest_4306 0.72 -0.7
4,506,082 - Psest_4306 0.72 -0.6
4,506,082 - Psest_4306 0.72 -0.2
4,506,082 - Psest_4306 0.72 -0.2
4,506,132 + Psest_4306 0.76 +0.5
4,506,132 + Psest_4306 0.76 +0.7
4,506,132 + Psest_4306 0.76 +0.1
4,506,133 - Psest_4306 0.76 -0.2
4,506,133 - Psest_4306 0.76 -0.7
4,506,133 - Psest_4306 0.76 +0.6
4,506,133 - Psest_4306 0.76 -0.2
4,506,133 - Psest_4306 0.76 +1.0
4,506,133 - Psest_4306 0.76 -0.8
4,506,133 - Psest_4306 0.76 +0.4
4,506,133 - Psest_4306 0.76 -0.1
4,506,133 - Psest_4306 0.76 -0.9
4,506,338 - +0.2
4,506,428 + -0.3
4,506,429 - +0.1
4,506,805 - Psest_4307 0.30 -0.1
4,506,805 - Psest_4307 0.30 +1.6
4,507,237 + Psest_4307 0.71 +0.3
4,507,238 - Psest_4307 0.72 +0.8
4,507,238 - Psest_4307 0.72 +1.3
4,507,297 - Psest_4307 0.77 -0.4
4,507,325 + Psest_4307 0.80 +0.6
4,507,326 - Psest_4307 0.80 +1.2
4,507,348 - Psest_4307 0.82 -0.5
4,507,512 + -0.0
4,507,513 - +0.0
4,507,554 - -1.1
4,507,557 + -0.7
4,507,557 + +0.7
4,507,557 + -1.0
4,507,557 + +0.0
4,507,557 + -0.6
4,507,557 + -0.4
4,507,558 - -0.0
4,507,558 - -1.2
4,507,558 - -0.3
4,508,082 + -0.1
4,508,082 + +0.4
4,508,082 + +0.8

Or see this region's nucleotide sequence