Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4306 and Psest_4307 are separated by 53 nucleotides Psest_4307 and Psest_4308 are separated by 58 nucleotides Psest_4308 and Psest_4309 overlap by 4 nucleotides
Psest_4306: Psest_4306 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 4,505,121 to 4,506,446
_4306
Psest_4307: Psest_4307 - ABC-type Zn2+ transport system, periplasmic component/surface adhesin, at 4,506,500 to 4,507,531
_4307
Psest_4308: Psest_4308 - Fe2+/Zn2+ uptake regulation proteins, at 4,507,590 to 4,508,075
_4308
Psest_4309: Psest_4309 - ABC-type Mn/Zn transport systems, ATPase component, at 4,508,072 to 4,508,842
_4309
Position (kb)
4506
4507
4508 Strain fitness (log2 ratio)
-1
0
1 at 4505.657 kb on + strand, within Psest_4306 at 4505.657 kb on + strand, within Psest_4306 at 4506.076 kb on - strand, within Psest_4306 at 4506.081 kb on + strand, within Psest_4306 at 4506.081 kb on + strand, within Psest_4306 at 4506.081 kb on + strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.082 kb on - strand, within Psest_4306 at 4506.132 kb on + strand, within Psest_4306 at 4506.132 kb on + strand, within Psest_4306 at 4506.132 kb on + strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.133 kb on - strand, within Psest_4306 at 4506.338 kb on - strand at 4506.428 kb on + strand at 4506.429 kb on - strand at 4506.805 kb on - strand, within Psest_4307 at 4506.805 kb on - strand, within Psest_4307 at 4507.237 kb on + strand, within Psest_4307 at 4507.238 kb on - strand, within Psest_4307 at 4507.238 kb on - strand, within Psest_4307 at 4507.297 kb on - strand, within Psest_4307 at 4507.325 kb on + strand, within Psest_4307 at 4507.326 kb on - strand, within Psest_4307 at 4507.348 kb on - strand, within Psest_4307 at 4507.512 kb on + strand at 4507.513 kb on - strand at 4507.554 kb on - strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.557 kb on + strand at 4507.558 kb on - strand at 4507.558 kb on - strand at 4507.558 kb on - strand at 4508.082 kb on + strand at 4508.082 kb on + strand at 4508.082 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 4,505,657 + Psest_4306 0.40 -0.3 4,505,657 + Psest_4306 0.40 +0.7 4,506,076 - Psest_4306 0.72 -0.4 4,506,081 + Psest_4306 0.72 +0.5 4,506,081 + Psest_4306 0.72 +0.6 4,506,081 + Psest_4306 0.72 -0.2 4,506,082 - Psest_4306 0.72 +0.2 4,506,082 - Psest_4306 0.72 +0.4 4,506,082 - Psest_4306 0.72 -0.7 4,506,082 - Psest_4306 0.72 -0.6 4,506,082 - Psest_4306 0.72 -0.2 4,506,082 - Psest_4306 0.72 -0.2 4,506,132 + Psest_4306 0.76 +0.5 4,506,132 + Psest_4306 0.76 +0.7 4,506,132 + Psest_4306 0.76 +0.1 4,506,133 - Psest_4306 0.76 -0.2 4,506,133 - Psest_4306 0.76 -0.7 4,506,133 - Psest_4306 0.76 +0.6 4,506,133 - Psest_4306 0.76 -0.2 4,506,133 - Psest_4306 0.76 +1.0 4,506,133 - Psest_4306 0.76 -0.8 4,506,133 - Psest_4306 0.76 +0.4 4,506,133 - Psest_4306 0.76 -0.1 4,506,133 - Psest_4306 0.76 -0.9 4,506,338 - +0.2 4,506,428 + -0.3 4,506,429 - +0.1 4,506,805 - Psest_4307 0.30 -0.1 4,506,805 - Psest_4307 0.30 +1.6 4,507,237 + Psest_4307 0.71 +0.3 4,507,238 - Psest_4307 0.72 +0.8 4,507,238 - Psest_4307 0.72 +1.3 4,507,297 - Psest_4307 0.77 -0.4 4,507,325 + Psest_4307 0.80 +0.6 4,507,326 - Psest_4307 0.80 +1.2 4,507,348 - Psest_4307 0.82 -0.5 4,507,512 + -0.0 4,507,513 - +0.0 4,507,554 - -1.1 4,507,557 + -0.7 4,507,557 + +0.7 4,507,557 + -1.0 4,507,557 + +0.0 4,507,557 + -0.6 4,507,557 + -0.4 4,507,558 - -0.0 4,507,558 - -1.2 4,507,558 - -0.3 4,508,082 + -0.1 4,508,082 + +0.4 4,508,082 + +0.8
Or see this region's nucleotide sequence