Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4149

Experiment: Anaerobic 500 uM Zinc chloride sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4147 and Psest_4148 overlap by 1 nucleotidesPsest_4148 and Psest_4149 are separated by 14 nucleotidesPsest_4149 and Psest_4150 are separated by 9 nucleotides Psest_4147: Psest_4147 - Flagellar basal body L-ring protein, at 4,330,962 to 4,331,630 _4147 Psest_4148: Psest_4148 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 4,331,630 to 4,332,415 _4148 Psest_4149: Psest_4149 - fagellar hook-basal body proteins, at 4,332,430 to 4,333,158 _4149 Psest_4150: Psest_4150 - fagellar hook-basal body proteins, at 4,333,168 to 4,334,358 _4150 Position (kb) 4332 4333 4334Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4331.513 kb on - strand, within Psest_4147at 4331.513 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.697 kb on + strandat 4332.075 kb on + strand, within Psest_4148at 4332.075 kb on + strand, within Psest_4148at 4332.075 kb on + strand, within Psest_4148at 4332.075 kb on + strand, within Psest_4148at 4332.076 kb on - strand, within Psest_4148at 4332.076 kb on - strand, within Psest_4148at 4332.279 kb on + strand, within Psest_4148at 4332.279 kb on + strand, within Psest_4148at 4332.279 kb on + strand, within Psest_4148at 4332.279 kb on + strand, within Psest_4148at 4332.280 kb on - strand, within Psest_4148at 4332.280 kb on - strand, within Psest_4148at 4332.280 kb on - strand, within Psest_4148at 4332.420 kb on + strandat 4332.420 kb on + strandat 4332.494 kb on - strandat 4332.589 kb on + strand, within Psest_4149at 4332.589 kb on + strand, within Psest_4149at 4332.589 kb on + strand, within Psest_4149at 4332.767 kb on + strand, within Psest_4149at 4332.866 kb on + strand, within Psest_4149at 4332.866 kb on + strand, within Psest_4149at 4333.014 kb on - strand, within Psest_4149at 4333.142 kb on + strandat 4333.143 kb on - strandat 4333.235 kb on + strandat 4333.235 kb on + strandat 4333.235 kb on + strandat 4333.235 kb on + strandat 4333.235 kb on + strandat 4333.236 kb on - strandat 4333.236 kb on - strandat 4333.236 kb on - strandat 4333.239 kb on + strandat 4333.239 kb on + strandat 4333.239 kb on + strandat 4333.239 kb on + strandat 4333.239 kb on + strandat 4333.261 kb on + strandat 4333.261 kb on + strandat 4333.261 kb on + strandat 4333.262 kb on - strandat 4333.469 kb on + strand, within Psest_4150at 4333.469 kb on + strand, within Psest_4150at 4333.470 kb on - strand, within Psest_4150at 4333.478 kb on + strand, within Psest_4150at 4333.479 kb on - strand, within Psest_4150at 4333.589 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.733 kb on + strand, within Psest_4150at 4333.733 kb on + strand, within Psest_4150at 4333.733 kb on + strand, within Psest_4150at 4333.772 kb on + strand, within Psest_4150at 4333.772 kb on + strand, within Psest_4150at 4333.772 kb on + strand, within Psest_4150at 4333.772 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.836 kb on - strand, within Psest_4150at 4333.836 kb on - strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.094 kb on + strand, within Psest_4150

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2
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4,331,513 - Psest_4147 0.82 -0.1
4,331,513 - Psest_4147 0.82 -0.5
4,331,534 - Psest_4147 0.86 -0.2
4,331,534 - Psest_4147 0.86 -0.2
4,331,534 - Psest_4147 0.86 -0.1
4,331,697 + -0.2
4,332,075 + Psest_4148 0.57 -0.1
4,332,075 + Psest_4148 0.57 -0.2
4,332,075 + Psest_4148 0.57 +0.1
4,332,075 + Psest_4148 0.57 +0.4
4,332,076 - Psest_4148 0.57 +3.2
4,332,076 - Psest_4148 0.57 -0.6
4,332,279 + Psest_4148 0.83 -0.2
4,332,279 + Psest_4148 0.83 +0.9
4,332,279 + Psest_4148 0.83 +0.0
4,332,279 + Psest_4148 0.83 +0.2
4,332,280 - Psest_4148 0.83 +0.2
4,332,280 - Psest_4148 0.83 +0.2
4,332,280 - Psest_4148 0.83 -0.8
4,332,420 + +0.7
4,332,420 + -0.6
4,332,494 - +0.1
4,332,589 + Psest_4149 0.22 -0.2
4,332,589 + Psest_4149 0.22 +0.9
4,332,589 + Psest_4149 0.22 +0.6
4,332,767 + Psest_4149 0.46 +1.0
4,332,866 + Psest_4149 0.60 -0.5
4,332,866 + Psest_4149 0.60 +0.7
4,333,014 - Psest_4149 0.80 +0.7
4,333,142 + -0.4
4,333,143 - -0.1
4,333,235 + -0.3
4,333,235 + +0.1
4,333,235 + +0.4
4,333,235 + +0.1
4,333,235 + +1.1
4,333,236 - -0.3
4,333,236 - -0.5
4,333,236 - -0.0
4,333,239 + -0.0
4,333,239 + +0.1
4,333,239 + -0.4
4,333,239 + -1.7
4,333,239 + -0.4
4,333,261 + +0.7
4,333,261 + -1.2
4,333,261 + +1.8
4,333,262 - +0.2
4,333,469 + Psest_4150 0.25 +0.2
4,333,469 + Psest_4150 0.25 -0.1
4,333,470 - Psest_4150 0.25 +0.8
4,333,478 + Psest_4150 0.26 -0.4
4,333,479 - Psest_4150 0.26 +1.0
4,333,589 + Psest_4150 0.35 +0.1
4,333,730 + Psest_4150 0.47 -0.5
4,333,730 + Psest_4150 0.47 -0.2
4,333,730 + Psest_4150 0.47 +1.0
4,333,730 + Psest_4150 0.47 -0.3
4,333,730 + Psest_4150 0.47 +0.8
4,333,730 + Psest_4150 0.47 +0.4
4,333,730 + Psest_4150 0.47 +0.0
4,333,730 + Psest_4150 0.47 +0.5
4,333,731 - Psest_4150 0.47 -0.2
4,333,731 - Psest_4150 0.47 +0.6
4,333,731 - Psest_4150 0.47 -1.9
4,333,731 - Psest_4150 0.47 -1.0
4,333,731 - Psest_4150 0.47 -0.7
4,333,731 - Psest_4150 0.47 +1.3
4,333,731 - Psest_4150 0.47 -0.4
4,333,733 + Psest_4150 0.47 -0.3
4,333,733 + Psest_4150 0.47 +0.3
4,333,733 + Psest_4150 0.47 +0.4
4,333,772 + Psest_4150 0.51 +0.1
4,333,772 + Psest_4150 0.51 -0.0
4,333,772 + Psest_4150 0.51 -0.3
4,333,772 + Psest_4150 0.51 -0.4
4,333,808 + Psest_4150 0.54 +0.6
4,333,808 + Psest_4150 0.54 -0.8
4,333,808 + Psest_4150 0.54 +0.2
4,333,808 + Psest_4150 0.54 +0.7
4,333,808 + Psest_4150 0.54 +0.9
4,333,823 + Psest_4150 0.55 +0.4
4,333,823 + Psest_4150 0.55 +0.3
4,333,823 + Psest_4150 0.55 -0.2
4,333,823 + Psest_4150 0.55 -0.4
4,333,823 + Psest_4150 0.55 +0.2
4,333,823 + Psest_4150 0.55 -1.2
4,333,823 + Psest_4150 0.55 +0.1
4,333,824 - Psest_4150 0.55 +0.2
4,333,824 - Psest_4150 0.55 +0.5
4,333,824 - Psest_4150 0.55 +0.4
4,333,824 - Psest_4150 0.55 +0.3
4,333,824 - Psest_4150 0.55 +0.1
4,333,824 - Psest_4150 0.55 -0.2
4,333,824 - Psest_4150 0.55 +0.1
4,333,835 + Psest_4150 0.56 -0.8
4,333,835 + Psest_4150 0.56 +1.2
4,333,835 + Psest_4150 0.56 +0.5
4,333,835 + Psest_4150 0.56 +0.8
4,333,835 + Psest_4150 0.56 -0.3
4,333,835 + Psest_4150 0.56 -0.2
4,333,836 - Psest_4150 0.56 -0.5
4,333,836 - Psest_4150 0.56 -0.2
4,334,039 + Psest_4150 0.73 -0.1
4,334,039 + Psest_4150 0.73 +0.6
4,334,039 + Psest_4150 0.73 -0.9
4,334,039 + Psest_4150 0.73 +0.2
4,334,039 + Psest_4150 0.73 -1.2
4,334,039 + Psest_4150 0.73 +0.5
4,334,039 + Psest_4150 0.73 -0.0
4,334,039 + Psest_4150 0.73 +0.4
4,334,039 + Psest_4150 0.73 -0.1
4,334,039 + Psest_4150 0.73 +0.5
4,334,039 + Psest_4150 0.73 +0.1
4,334,039 + Psest_4150 0.73 -0.4
4,334,039 + Psest_4150 0.73 +0.2
4,334,039 + Psest_4150 0.73 +0.1
4,334,039 + Psest_4150 0.73 -0.3
4,334,039 + Psest_4150 0.73 +0.5
4,334,039 + Psest_4150 0.73 +0.1
4,334,039 + Psest_4150 0.73 -0.5
4,334,040 - Psest_4150 0.73 +0.2
4,334,040 - Psest_4150 0.73 -0.3
4,334,040 - Psest_4150 0.73 +0.0
4,334,040 - Psest_4150 0.73 +0.3
4,334,040 - Psest_4150 0.73 +0.7
4,334,040 - Psest_4150 0.73 +0.1
4,334,040 - Psest_4150 0.73 -1.0
4,334,040 - Psest_4150 0.73 -0.2
4,334,040 - Psest_4150 0.73 -0.0
4,334,040 - Psest_4150 0.73 -0.1
4,334,040 - Psest_4150 0.73 -0.0
4,334,040 - Psest_4150 0.73 -0.3
4,334,040 - Psest_4150 0.73 -0.0
4,334,040 - Psest_4150 0.73 +2.2
4,334,040 - Psest_4150 0.73 +0.9
4,334,040 - Psest_4150 0.73 +1.4
4,334,040 - Psest_4150 0.73 +0.4
4,334,040 - Psest_4150 0.73 -0.2
4,334,094 + Psest_4150 0.78 -0.3

Or see this region's nucleotide sequence