Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4147 and Psest_4148 overlap by 1 nucleotides Psest_4148 and Psest_4149 are separated by 14 nucleotides Psest_4149 and Psest_4150 are separated by 9 nucleotides
Psest_4147: Psest_4147 - Flagellar basal body L-ring protein, at 4,330,962 to 4,331,630
_4147
Psest_4148: Psest_4148 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 4,331,630 to 4,332,415
_4148
Psest_4149: Psest_4149 - fagellar hook-basal body proteins, at 4,332,430 to 4,333,158
_4149
Psest_4150: Psest_4150 - fagellar hook-basal body proteins, at 4,333,168 to 4,334,358
_4150
Position (kb)
4332
4333
4334 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4331.513 kb on - strand, within Psest_4147 at 4331.513 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.534 kb on - strand, within Psest_4147 at 4331.697 kb on + strand at 4332.075 kb on + strand, within Psest_4148 at 4332.075 kb on + strand, within Psest_4148 at 4332.075 kb on + strand, within Psest_4148 at 4332.075 kb on + strand, within Psest_4148 at 4332.076 kb on - strand, within Psest_4148 at 4332.076 kb on - strand, within Psest_4148 at 4332.279 kb on + strand, within Psest_4148 at 4332.279 kb on + strand, within Psest_4148 at 4332.279 kb on + strand, within Psest_4148 at 4332.279 kb on + strand, within Psest_4148 at 4332.280 kb on - strand, within Psest_4148 at 4332.280 kb on - strand, within Psest_4148 at 4332.280 kb on - strand, within Psest_4148 at 4332.420 kb on + strand at 4332.420 kb on + strand at 4332.494 kb on - strand at 4332.589 kb on + strand, within Psest_4149 at 4332.589 kb on + strand, within Psest_4149 at 4332.589 kb on + strand, within Psest_4149 at 4332.767 kb on + strand, within Psest_4149 at 4332.866 kb on + strand, within Psest_4149 at 4332.866 kb on + strand, within Psest_4149 at 4333.014 kb on - strand, within Psest_4149 at 4333.142 kb on + strand at 4333.143 kb on - strand at 4333.235 kb on + strand at 4333.235 kb on + strand at 4333.235 kb on + strand at 4333.235 kb on + strand at 4333.235 kb on + strand at 4333.236 kb on - strand at 4333.236 kb on - strand at 4333.236 kb on - strand at 4333.239 kb on + strand at 4333.239 kb on + strand at 4333.239 kb on + strand at 4333.239 kb on + strand at 4333.239 kb on + strand at 4333.261 kb on + strand at 4333.261 kb on + strand at 4333.261 kb on + strand at 4333.262 kb on - strand at 4333.469 kb on + strand, within Psest_4150 at 4333.469 kb on + strand, within Psest_4150 at 4333.470 kb on - strand, within Psest_4150 at 4333.478 kb on + strand, within Psest_4150 at 4333.479 kb on - strand, within Psest_4150 at 4333.589 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.733 kb on + strand, within Psest_4150 at 4333.733 kb on + strand, within Psest_4150 at 4333.733 kb on + strand, within Psest_4150 at 4333.772 kb on + strand, within Psest_4150 at 4333.772 kb on + strand, within Psest_4150 at 4333.772 kb on + strand, within Psest_4150 at 4333.772 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.836 kb on - strand, within Psest_4150 at 4333.836 kb on - strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.094 kb on + strand, within Psest_4150
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 4,331,513 - Psest_4147 0.82 -0.1 4,331,513 - Psest_4147 0.82 -0.5 4,331,534 - Psest_4147 0.86 -0.2 4,331,534 - Psest_4147 0.86 -0.2 4,331,534 - Psest_4147 0.86 -0.1 4,331,697 + -0.2 4,332,075 + Psest_4148 0.57 -0.1 4,332,075 + Psest_4148 0.57 -0.2 4,332,075 + Psest_4148 0.57 +0.1 4,332,075 + Psest_4148 0.57 +0.4 4,332,076 - Psest_4148 0.57 +3.2 4,332,076 - Psest_4148 0.57 -0.6 4,332,279 + Psest_4148 0.83 -0.2 4,332,279 + Psest_4148 0.83 +0.9 4,332,279 + Psest_4148 0.83 +0.0 4,332,279 + Psest_4148 0.83 +0.2 4,332,280 - Psest_4148 0.83 +0.2 4,332,280 - Psest_4148 0.83 +0.2 4,332,280 - Psest_4148 0.83 -0.8 4,332,420 + +0.7 4,332,420 + -0.6 4,332,494 - +0.1 4,332,589 + Psest_4149 0.22 -0.2 4,332,589 + Psest_4149 0.22 +0.9 4,332,589 + Psest_4149 0.22 +0.6 4,332,767 + Psest_4149 0.46 +1.0 4,332,866 + Psest_4149 0.60 -0.5 4,332,866 + Psest_4149 0.60 +0.7 4,333,014 - Psest_4149 0.80 +0.7 4,333,142 + -0.4 4,333,143 - -0.1 4,333,235 + -0.3 4,333,235 + +0.1 4,333,235 + +0.4 4,333,235 + +0.1 4,333,235 + +1.1 4,333,236 - -0.3 4,333,236 - -0.5 4,333,236 - -0.0 4,333,239 + -0.0 4,333,239 + +0.1 4,333,239 + -0.4 4,333,239 + -1.7 4,333,239 + -0.4 4,333,261 + +0.7 4,333,261 + -1.2 4,333,261 + +1.8 4,333,262 - +0.2 4,333,469 + Psest_4150 0.25 +0.2 4,333,469 + Psest_4150 0.25 -0.1 4,333,470 - Psest_4150 0.25 +0.8 4,333,478 + Psest_4150 0.26 -0.4 4,333,479 - Psest_4150 0.26 +1.0 4,333,589 + Psest_4150 0.35 +0.1 4,333,730 + Psest_4150 0.47 -0.5 4,333,730 + Psest_4150 0.47 -0.2 4,333,730 + Psest_4150 0.47 +1.0 4,333,730 + Psest_4150 0.47 -0.3 4,333,730 + Psest_4150 0.47 +0.8 4,333,730 + Psest_4150 0.47 +0.4 4,333,730 + Psest_4150 0.47 +0.0 4,333,730 + Psest_4150 0.47 +0.5 4,333,731 - Psest_4150 0.47 -0.2 4,333,731 - Psest_4150 0.47 +0.6 4,333,731 - Psest_4150 0.47 -1.9 4,333,731 - Psest_4150 0.47 -1.0 4,333,731 - Psest_4150 0.47 -0.7 4,333,731 - Psest_4150 0.47 +1.3 4,333,731 - Psest_4150 0.47 -0.4 4,333,733 + Psest_4150 0.47 -0.3 4,333,733 + Psest_4150 0.47 +0.3 4,333,733 + Psest_4150 0.47 +0.4 4,333,772 + Psest_4150 0.51 +0.1 4,333,772 + Psest_4150 0.51 -0.0 4,333,772 + Psest_4150 0.51 -0.3 4,333,772 + Psest_4150 0.51 -0.4 4,333,808 + Psest_4150 0.54 +0.6 4,333,808 + Psest_4150 0.54 -0.8 4,333,808 + Psest_4150 0.54 +0.2 4,333,808 + Psest_4150 0.54 +0.7 4,333,808 + Psest_4150 0.54 +0.9 4,333,823 + Psest_4150 0.55 +0.4 4,333,823 + Psest_4150 0.55 +0.3 4,333,823 + Psest_4150 0.55 -0.2 4,333,823 + Psest_4150 0.55 -0.4 4,333,823 + Psest_4150 0.55 +0.2 4,333,823 + Psest_4150 0.55 -1.2 4,333,823 + Psest_4150 0.55 +0.1 4,333,824 - Psest_4150 0.55 +0.2 4,333,824 - Psest_4150 0.55 +0.5 4,333,824 - Psest_4150 0.55 +0.4 4,333,824 - Psest_4150 0.55 +0.3 4,333,824 - Psest_4150 0.55 +0.1 4,333,824 - Psest_4150 0.55 -0.2 4,333,824 - Psest_4150 0.55 +0.1 4,333,835 + Psest_4150 0.56 -0.8 4,333,835 + Psest_4150 0.56 +1.2 4,333,835 + Psest_4150 0.56 +0.5 4,333,835 + Psest_4150 0.56 +0.8 4,333,835 + Psest_4150 0.56 -0.3 4,333,835 + Psest_4150 0.56 -0.2 4,333,836 - Psest_4150 0.56 -0.5 4,333,836 - Psest_4150 0.56 -0.2 4,334,039 + Psest_4150 0.73 -0.1 4,334,039 + Psest_4150 0.73 +0.6 4,334,039 + Psest_4150 0.73 -0.9 4,334,039 + Psest_4150 0.73 +0.2 4,334,039 + Psest_4150 0.73 -1.2 4,334,039 + Psest_4150 0.73 +0.5 4,334,039 + Psest_4150 0.73 -0.0 4,334,039 + Psest_4150 0.73 +0.4 4,334,039 + Psest_4150 0.73 -0.1 4,334,039 + Psest_4150 0.73 +0.5 4,334,039 + Psest_4150 0.73 +0.1 4,334,039 + Psest_4150 0.73 -0.4 4,334,039 + Psest_4150 0.73 +0.2 4,334,039 + Psest_4150 0.73 +0.1 4,334,039 + Psest_4150 0.73 -0.3 4,334,039 + Psest_4150 0.73 +0.5 4,334,039 + Psest_4150 0.73 +0.1 4,334,039 + Psest_4150 0.73 -0.5 4,334,040 - Psest_4150 0.73 +0.2 4,334,040 - Psest_4150 0.73 -0.3 4,334,040 - Psest_4150 0.73 +0.0 4,334,040 - Psest_4150 0.73 +0.3 4,334,040 - Psest_4150 0.73 +0.7 4,334,040 - Psest_4150 0.73 +0.1 4,334,040 - Psest_4150 0.73 -1.0 4,334,040 - Psest_4150 0.73 -0.2 4,334,040 - Psest_4150 0.73 -0.0 4,334,040 - Psest_4150 0.73 -0.1 4,334,040 - Psest_4150 0.73 -0.0 4,334,040 - Psest_4150 0.73 -0.3 4,334,040 - Psest_4150 0.73 -0.0 4,334,040 - Psest_4150 0.73 +2.2 4,334,040 - Psest_4150 0.73 +0.9 4,334,040 - Psest_4150 0.73 +1.4 4,334,040 - Psest_4150 0.73 +0.4 4,334,040 - Psest_4150 0.73 -0.2 4,334,094 + Psest_4150 0.78 -0.3
Or see this region's nucleotide sequence