Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3453

Experiment: Anaerobic 500 uM Zinc chloride sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3452 and Psest_3453 are separated by 160 nucleotidesPsest_3453 and Psest_3454 are separated by 141 nucleotidesPsest_3454 and Psest_3455 are separated by 10 nucleotides Psest_3452: Psest_3452 - Zn-dependent hydrolases, including glyoxylases, at 3,623,815 to 3,625,182 _3452 Psest_3453: Psest_3453 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 3,625,343 to 3,626,899 _3453 Psest_3454: Psest_3454 - Adenylate cyclase, at 3,627,041 to 3,627,445 _3454 Psest_3455: Psest_3455 - Dihaem cytochrome c., at 3,627,456 to 3,627,980 _3455 Position (kb) 3625 3626 3627Strain fitness (log2 ratio) -1 0 1at 3624.520 kb on + strand, within Psest_3452at 3624.521 kb on - strand, within Psest_3452at 3624.763 kb on + strand, within Psest_3452at 3624.763 kb on + strand, within Psest_3452at 3624.764 kb on - strand, within Psest_3452at 3624.764 kb on - strand, within Psest_3452at 3624.837 kb on - strand, within Psest_3452at 3624.844 kb on + strand, within Psest_3452at 3624.845 kb on - strand, within Psest_3452at 3625.074 kb on - strandat 3625.347 kb on + strandat 3625.920 kb on + strand, within Psest_3453at 3625.920 kb on + strand, within Psest_3453at 3625.920 kb on + strand, within Psest_3453at 3625.920 kb on + strand, within Psest_3453at 3625.920 kb on + strand, within Psest_3453at 3625.920 kb on + strand, within Psest_3453at 3625.920 kb on + strand, within Psest_3453at 3625.921 kb on - strand, within Psest_3453at 3625.921 kb on - strand, within Psest_3453at 3625.921 kb on - strand, within Psest_3453at 3625.921 kb on - strand, within Psest_3453at 3625.921 kb on - strand, within Psest_3453at 3625.921 kb on - strand, within Psest_3453at 3625.921 kb on - strand, within Psest_3453at 3626.181 kb on + strand, within Psest_3453at 3626.449 kb on - strand, within Psest_3453at 3626.449 kb on - strand, within Psest_3453at 3626.612 kb on - strand, within Psest_3453at 3626.835 kb on + strandat 3626.917 kb on + strandat 3626.918 kb on - strandat 3626.935 kb on + strandat 3626.935 kb on + strandat 3626.936 kb on - strandat 3627.192 kb on - strand, within Psest_3454at 3627.443 kb on + strandat 3627.443 kb on + strandat 3627.443 kb on + strandat 3627.444 kb on - strandat 3627.449 kb on + strandat 3627.450 kb on - strandat 3627.639 kb on + strand, within Psest_3455at 3627.639 kb on + strand, within Psest_3455at 3627.640 kb on - strand, within Psest_3455at 3627.640 kb on - strand, within Psest_3455

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2
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3,624,520 + Psest_3452 0.52 +0.8
3,624,521 - Psest_3452 0.52 -0.8
3,624,763 + Psest_3452 0.69 +0.7
3,624,763 + Psest_3452 0.69 -0.2
3,624,764 - Psest_3452 0.69 -0.2
3,624,764 - Psest_3452 0.69 -0.7
3,624,837 - Psest_3452 0.75 +1.5
3,624,844 + Psest_3452 0.75 -0.1
3,624,845 - Psest_3452 0.75 +1.4
3,625,074 - +1.7
3,625,347 + +0.0
3,625,920 + Psest_3453 0.37 +0.1
3,625,920 + Psest_3453 0.37 +0.1
3,625,920 + Psest_3453 0.37 +0.4
3,625,920 + Psest_3453 0.37 -0.1
3,625,920 + Psest_3453 0.37 +0.7
3,625,920 + Psest_3453 0.37 +0.2
3,625,920 + Psest_3453 0.37 +0.7
3,625,921 - Psest_3453 0.37 -0.1
3,625,921 - Psest_3453 0.37 +0.9
3,625,921 - Psest_3453 0.37 -0.2
3,625,921 - Psest_3453 0.37 +0.1
3,625,921 - Psest_3453 0.37 +0.2
3,625,921 - Psest_3453 0.37 +0.1
3,625,921 - Psest_3453 0.37 -0.1
3,626,181 + Psest_3453 0.54 +0.1
3,626,449 - Psest_3453 0.71 +0.7
3,626,449 - Psest_3453 0.71 +0.2
3,626,612 - Psest_3453 0.82 +1.2
3,626,835 + -0.4
3,626,917 + -0.6
3,626,918 - +0.3
3,626,935 + -0.9
3,626,935 + +0.6
3,626,936 - +0.1
3,627,192 - Psest_3454 0.37 +0.5
3,627,443 + +0.4
3,627,443 + +0.1
3,627,443 + -0.0
3,627,444 - +0.2
3,627,449 + +0.2
3,627,450 - -0.0
3,627,639 + Psest_3455 0.35 +0.0
3,627,639 + Psest_3455 0.35 +0.7
3,627,640 - Psest_3455 0.35 +0.9
3,627,640 - Psest_3455 0.35 -0.3

Or see this region's nucleotide sequence