Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3452 and Psest_3453 are separated by 160 nucleotides Psest_3453 and Psest_3454 are separated by 141 nucleotides Psest_3454 and Psest_3455 are separated by 10 nucleotides
Psest_3452: Psest_3452 - Zn-dependent hydrolases, including glyoxylases, at 3,623,815 to 3,625,182
_3452
Psest_3453: Psest_3453 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 3,625,343 to 3,626,899
_3453
Psest_3454: Psest_3454 - Adenylate cyclase, at 3,627,041 to 3,627,445
_3454
Psest_3455: Psest_3455 - Dihaem cytochrome c., at 3,627,456 to 3,627,980
_3455
Position (kb)
3625
3626
3627 Strain fitness (log2 ratio)
-1
0
1 at 3624.520 kb on + strand, within Psest_3452 at 3624.521 kb on - strand, within Psest_3452 at 3624.763 kb on + strand, within Psest_3452 at 3624.763 kb on + strand, within Psest_3452 at 3624.764 kb on - strand, within Psest_3452 at 3624.764 kb on - strand, within Psest_3452 at 3624.837 kb on - strand, within Psest_3452 at 3624.844 kb on + strand, within Psest_3452 at 3624.845 kb on - strand, within Psest_3452 at 3625.074 kb on - strand at 3625.347 kb on + strand at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.920 kb on + strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3625.921 kb on - strand, within Psest_3453 at 3626.181 kb on + strand, within Psest_3453 at 3626.449 kb on - strand, within Psest_3453 at 3626.449 kb on - strand, within Psest_3453 at 3626.612 kb on - strand, within Psest_3453 at 3626.835 kb on + strand at 3626.917 kb on + strand at 3626.918 kb on - strand at 3626.935 kb on + strand at 3626.935 kb on + strand at 3626.936 kb on - strand at 3627.192 kb on - strand, within Psest_3454 at 3627.443 kb on + strand at 3627.443 kb on + strand at 3627.443 kb on + strand at 3627.444 kb on - strand at 3627.449 kb on + strand at 3627.450 kb on - strand at 3627.639 kb on + strand, within Psest_3455 at 3627.639 kb on + strand, within Psest_3455 at 3627.640 kb on - strand, within Psest_3455 at 3627.640 kb on - strand, within Psest_3455
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 3,624,520 + Psest_3452 0.52 +0.8 3,624,521 - Psest_3452 0.52 -0.8 3,624,763 + Psest_3452 0.69 +0.7 3,624,763 + Psest_3452 0.69 -0.2 3,624,764 - Psest_3452 0.69 -0.2 3,624,764 - Psest_3452 0.69 -0.7 3,624,837 - Psest_3452 0.75 +1.5 3,624,844 + Psest_3452 0.75 -0.1 3,624,845 - Psest_3452 0.75 +1.4 3,625,074 - +1.7 3,625,347 + +0.0 3,625,920 + Psest_3453 0.37 +0.1 3,625,920 + Psest_3453 0.37 +0.1 3,625,920 + Psest_3453 0.37 +0.4 3,625,920 + Psest_3453 0.37 -0.1 3,625,920 + Psest_3453 0.37 +0.7 3,625,920 + Psest_3453 0.37 +0.2 3,625,920 + Psest_3453 0.37 +0.7 3,625,921 - Psest_3453 0.37 -0.1 3,625,921 - Psest_3453 0.37 +0.9 3,625,921 - Psest_3453 0.37 -0.2 3,625,921 - Psest_3453 0.37 +0.1 3,625,921 - Psest_3453 0.37 +0.2 3,625,921 - Psest_3453 0.37 +0.1 3,625,921 - Psest_3453 0.37 -0.1 3,626,181 + Psest_3453 0.54 +0.1 3,626,449 - Psest_3453 0.71 +0.7 3,626,449 - Psest_3453 0.71 +0.2 3,626,612 - Psest_3453 0.82 +1.2 3,626,835 + -0.4 3,626,917 + -0.6 3,626,918 - +0.3 3,626,935 + -0.9 3,626,935 + +0.6 3,626,936 - +0.1 3,627,192 - Psest_3454 0.37 +0.5 3,627,443 + +0.4 3,627,443 + +0.1 3,627,443 + -0.0 3,627,444 - +0.2 3,627,449 + +0.2 3,627,450 - -0.0 3,627,639 + Psest_3455 0.35 +0.0 3,627,639 + Psest_3455 0.35 +0.7 3,627,640 - Psest_3455 0.35 +0.9 3,627,640 - Psest_3455 0.35 -0.3
Or see this region's nucleotide sequence