Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3246 and Psest_3247 are separated by 58 nucleotides Psest_3247 and Psest_3248 are separated by 14 nucleotides
Psest_3246: Psest_3246 - Protein of unknown function (DUF2914)., at 3,416,081 to 3,417,103
_3246
Psest_3247: Psest_3247 - Uncharacterized membrane protein, at 3,417,162 to 3,417,680
_3247
Psest_3248: Psest_3248 - Glucose/sorbosone dehydrogenases, at 3,417,695 to 3,419,026
_3248
Position (kb)
3417
3418 Strain fitness (log2 ratio)
-1
0
1
2 at 3416.317 kb on - strand, within Psest_3246 at 3416.477 kb on + strand, within Psest_3246 at 3416.477 kb on + strand, within Psest_3246 at 3416.477 kb on + strand, within Psest_3246 at 3416.478 kb on - strand, within Psest_3246 at 3416.481 kb on - strand, within Psest_3246 at 3416.867 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.909 kb on + strand, within Psest_3246 at 3416.910 kb on - strand, within Psest_3246 at 3416.910 kb on - strand, within Psest_3246 at 3416.910 kb on - strand, within Psest_3246 at 3416.910 kb on - strand, within Psest_3246 at 3416.910 kb on - strand, within Psest_3246 at 3416.910 kb on - strand, within Psest_3246 at 3416.910 kb on - strand, within Psest_3246 at 3417.132 kb on + strand at 3417.133 kb on - strand at 3417.458 kb on + strand, within Psest_3247 at 3417.458 kb on + strand, within Psest_3247 at 3417.572 kb on - strand, within Psest_3247 at 3417.679 kb on - strand at 3417.739 kb on - strand at 3417.739 kb on - strand at 3417.739 kb on - strand at 3417.804 kb on - strand at 3417.922 kb on - strand, within Psest_3248 at 3418.205 kb on + strand, within Psest_3248 at 3418.205 kb on + strand, within Psest_3248 at 3418.205 kb on + strand, within Psest_3248 at 3418.206 kb on - strand, within Psest_3248 at 3418.206 kb on - strand, within Psest_3248 at 3418.209 kb on + strand, within Psest_3248 at 3418.293 kb on + strand, within Psest_3248 at 3418.294 kb on - strand, within Psest_3248 at 3418.294 kb on - strand, within Psest_3248 at 3418.361 kb on + strand, within Psest_3248 at 3418.361 kb on + strand, within Psest_3248 at 3418.362 kb on - strand, within Psest_3248 at 3418.362 kb on - strand, within Psest_3248 at 3418.362 kb on - strand, within Psest_3248 at 3418.580 kb on + strand, within Psest_3248 at 3418.580 kb on + strand, within Psest_3248 at 3418.580 kb on + strand, within Psest_3248 at 3418.580 kb on + strand, within Psest_3248 at 3418.581 kb on - strand, within Psest_3248 at 3418.581 kb on - strand, within Psest_3248 at 3418.581 kb on - strand, within Psest_3248 at 3418.610 kb on + strand, within Psest_3248 at 3418.622 kb on + strand, within Psest_3248 at 3418.629 kb on - strand, within Psest_3248 at 3418.629 kb on - strand, within Psest_3248 at 3418.629 kb on - strand, within Psest_3248 at 3418.629 kb on - strand, within Psest_3248 at 3418.629 kb on - strand, within Psest_3248 at 3418.629 kb on - strand, within Psest_3248
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 3,416,317 - Psest_3246 0.23 +0.4 3,416,477 + Psest_3246 0.39 +0.7 3,416,477 + Psest_3246 0.39 +0.1 3,416,477 + Psest_3246 0.39 -1.0 3,416,478 - Psest_3246 0.39 +0.2 3,416,481 - Psest_3246 0.39 +0.2 3,416,867 + Psest_3246 0.77 -0.0 3,416,909 + Psest_3246 0.81 +0.3 3,416,909 + Psest_3246 0.81 +0.0 3,416,909 + Psest_3246 0.81 -0.8 3,416,909 + Psest_3246 0.81 -0.4 3,416,909 + Psest_3246 0.81 -0.0 3,416,909 + Psest_3246 0.81 +1.5 3,416,909 + Psest_3246 0.81 -1.3 3,416,909 + Psest_3246 0.81 +0.5 3,416,909 + Psest_3246 0.81 +0.2 3,416,910 - Psest_3246 0.81 -0.1 3,416,910 - Psest_3246 0.81 -0.6 3,416,910 - Psest_3246 0.81 +1.8 3,416,910 - Psest_3246 0.81 +0.5 3,416,910 - Psest_3246 0.81 +0.0 3,416,910 - Psest_3246 0.81 +0.1 3,416,910 - Psest_3246 0.81 -0.0 3,417,132 + -0.8 3,417,133 - -0.1 3,417,458 + Psest_3247 0.57 +0.1 3,417,458 + Psest_3247 0.57 +0.8 3,417,572 - Psest_3247 0.79 -0.1 3,417,679 - -0.9 3,417,739 - +0.2 3,417,739 - +0.6 3,417,739 - -0.1 3,417,804 - +0.2 3,417,922 - Psest_3248 0.17 -0.2 3,418,205 + Psest_3248 0.38 -0.3 3,418,205 + Psest_3248 0.38 -0.8 3,418,205 + Psest_3248 0.38 -0.8 3,418,206 - Psest_3248 0.38 -0.5 3,418,206 - Psest_3248 0.38 +0.1 3,418,209 + Psest_3248 0.39 +1.0 3,418,293 + Psest_3248 0.45 +1.7 3,418,294 - Psest_3248 0.45 -0.1 3,418,294 - Psest_3248 0.45 -0.2 3,418,361 + Psest_3248 0.50 -0.8 3,418,361 + Psest_3248 0.50 -0.3 3,418,362 - Psest_3248 0.50 +0.2 3,418,362 - Psest_3248 0.50 +2.7 3,418,362 - Psest_3248 0.50 +2.7 3,418,580 + Psest_3248 0.66 +0.1 3,418,580 + Psest_3248 0.66 +0.4 3,418,580 + Psest_3248 0.66 -0.0 3,418,580 + Psest_3248 0.66 +0.2 3,418,581 - Psest_3248 0.67 +0.2 3,418,581 - Psest_3248 0.67 +0.1 3,418,581 - Psest_3248 0.67 +0.1 3,418,610 + Psest_3248 0.69 -0.1 3,418,622 + Psest_3248 0.70 +0.9 3,418,629 - Psest_3248 0.70 -0.6 3,418,629 - Psest_3248 0.70 +0.8 3,418,629 - Psest_3248 0.70 +0.4 3,418,629 - Psest_3248 0.70 +1.1 3,418,629 - Psest_3248 0.70 +0.6 3,418,629 - Psest_3248 0.70 -1.2
Or see this region's nucleotide sequence