Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3177

Experiment: Anaerobic 500 uM Zinc chloride sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3176 and Psest_3177 overlap by 1 nucleotidesPsest_3177 and Psest_3178 are separated by 15 nucleotides Psest_3176: Psest_3176 - Predicted ATPase, at 3,348,200 to 3,349,675 _3176 Psest_3177: Psest_3177 - hypothetical protein, at 3,349,675 to 3,349,887 _3177 Psest_3178: Psest_3178 - formyltetrahydrofolate deformylase, at 3,349,903 to 3,350,754 _3178 Position (kb) 3349 3350Strain fitness (log2 ratio) -1 0 1at 3348.682 kb on + strand, within Psest_3176at 3348.684 kb on + strand, within Psest_3176at 3348.684 kb on + strand, within Psest_3176at 3348.768 kb on + strand, within Psest_3176at 3348.957 kb on + strand, within Psest_3176at 3348.958 kb on - strand, within Psest_3176at 3349.081 kb on + strand, within Psest_3176at 3349.260 kb on + strand, within Psest_3176at 3349.336 kb on + strand, within Psest_3176at 3349.336 kb on + strand, within Psest_3176at 3349.336 kb on + strand, within Psest_3176at 3349.337 kb on - strand, within Psest_3176at 3349.340 kb on + strand, within Psest_3176at 3349.386 kb on + strand, within Psest_3176at 3349.451 kb on + strand, within Psest_3176at 3349.827 kb on + strand, within Psest_3177at 3349.827 kb on + strand, within Psest_3177at 3349.828 kb on - strand, within Psest_3177at 3349.930 kb on - strandat 3349.930 kb on - strandat 3349.990 kb on + strand, within Psest_3178at 3350.093 kb on + strand, within Psest_3178at 3350.093 kb on + strand, within Psest_3178at 3350.093 kb on + strand, within Psest_3178at 3350.093 kb on + strand, within Psest_3178at 3350.094 kb on - strand, within Psest_3178at 3350.430 kb on + strand, within Psest_3178at 3350.675 kb on + strandat 3350.675 kb on + strandat 3350.675 kb on + strandat 3350.849 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2
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3,348,682 + Psest_3176 0.33 -0.0
3,348,684 + Psest_3176 0.33 +0.9
3,348,684 + Psest_3176 0.33 -0.5
3,348,768 + Psest_3176 0.38 -1.2
3,348,957 + Psest_3176 0.51 -0.7
3,348,958 - Psest_3176 0.51 +0.0
3,349,081 + Psest_3176 0.60 +0.3
3,349,260 + Psest_3176 0.72 -0.6
3,349,336 + Psest_3176 0.77 -0.4
3,349,336 + Psest_3176 0.77 -0.0
3,349,336 + Psest_3176 0.77 -0.0
3,349,337 - Psest_3176 0.77 -0.4
3,349,340 + Psest_3176 0.77 -0.5
3,349,386 + Psest_3176 0.80 +0.4
3,349,451 + Psest_3176 0.85 +0.3
3,349,827 + Psest_3177 0.71 +0.5
3,349,827 + Psest_3177 0.71 +0.3
3,349,828 - Psest_3177 0.72 +0.0
3,349,930 - -1.0
3,349,930 - -0.8
3,349,990 + Psest_3178 0.10 -0.5
3,350,093 + Psest_3178 0.22 +1.6
3,350,093 + Psest_3178 0.22 -1.1
3,350,093 + Psest_3178 0.22 +0.3
3,350,093 + Psest_3178 0.22 +0.2
3,350,094 - Psest_3178 0.22 -1.5
3,350,430 + Psest_3178 0.62 -0.2
3,350,675 + +0.4
3,350,675 + +0.3
3,350,675 + +0.1
3,350,849 + -1.0

Or see this region's nucleotide sequence