Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3176 and Psest_3177 overlap by 1 nucleotides Psest_3177 and Psest_3178 are separated by 15 nucleotides
Psest_3176: Psest_3176 - Predicted ATPase, at 3,348,200 to 3,349,675
_3176
Psest_3177: Psest_3177 - hypothetical protein, at 3,349,675 to 3,349,887
_3177
Psest_3178: Psest_3178 - formyltetrahydrofolate deformylase, at 3,349,903 to 3,350,754
_3178
Position (kb)
3349
3350 Strain fitness (log2 ratio)
-1
0
1 at 3348.682 kb on + strand, within Psest_3176 at 3348.684 kb on + strand, within Psest_3176 at 3348.684 kb on + strand, within Psest_3176 at 3348.768 kb on + strand, within Psest_3176 at 3348.957 kb on + strand, within Psest_3176 at 3348.958 kb on - strand, within Psest_3176 at 3349.081 kb on + strand, within Psest_3176 at 3349.260 kb on + strand, within Psest_3176 at 3349.336 kb on + strand, within Psest_3176 at 3349.336 kb on + strand, within Psest_3176 at 3349.336 kb on + strand, within Psest_3176 at 3349.337 kb on - strand, within Psest_3176 at 3349.340 kb on + strand, within Psest_3176 at 3349.386 kb on + strand, within Psest_3176 at 3349.451 kb on + strand, within Psest_3176 at 3349.827 kb on + strand, within Psest_3177 at 3349.827 kb on + strand, within Psest_3177 at 3349.828 kb on - strand, within Psest_3177 at 3349.930 kb on - strand at 3349.930 kb on - strand at 3349.990 kb on + strand, within Psest_3178 at 3350.093 kb on + strand, within Psest_3178 at 3350.093 kb on + strand, within Psest_3178 at 3350.093 kb on + strand, within Psest_3178 at 3350.093 kb on + strand, within Psest_3178 at 3350.094 kb on - strand, within Psest_3178 at 3350.430 kb on + strand, within Psest_3178 at 3350.675 kb on + strand at 3350.675 kb on + strand at 3350.675 kb on + strand at 3350.849 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 3,348,682 + Psest_3176 0.33 -0.0 3,348,684 + Psest_3176 0.33 +0.9 3,348,684 + Psest_3176 0.33 -0.5 3,348,768 + Psest_3176 0.38 -1.2 3,348,957 + Psest_3176 0.51 -0.7 3,348,958 - Psest_3176 0.51 +0.0 3,349,081 + Psest_3176 0.60 +0.3 3,349,260 + Psest_3176 0.72 -0.6 3,349,336 + Psest_3176 0.77 -0.4 3,349,336 + Psest_3176 0.77 -0.0 3,349,336 + Psest_3176 0.77 -0.0 3,349,337 - Psest_3176 0.77 -0.4 3,349,340 + Psest_3176 0.77 -0.5 3,349,386 + Psest_3176 0.80 +0.4 3,349,451 + Psest_3176 0.85 +0.3 3,349,827 + Psest_3177 0.71 +0.5 3,349,827 + Psest_3177 0.71 +0.3 3,349,828 - Psest_3177 0.72 +0.0 3,349,930 - -1.0 3,349,930 - -0.8 3,349,990 + Psest_3178 0.10 -0.5 3,350,093 + Psest_3178 0.22 +1.6 3,350,093 + Psest_3178 0.22 -1.1 3,350,093 + Psest_3178 0.22 +0.3 3,350,093 + Psest_3178 0.22 +0.2 3,350,094 - Psest_3178 0.22 -1.5 3,350,430 + Psest_3178 0.62 -0.2 3,350,675 + +0.4 3,350,675 + +0.3 3,350,675 + +0.1 3,350,849 + -1.0
Or see this region's nucleotide sequence