Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2712 and Psest_2713 are separated by 225 nucleotides Psest_2713 and Psest_2714 are separated by 39 nucleotides Psest_2714 and Psest_2715 are separated by 93 nucleotides Psest_2715 and Psest_2716 overlap by 4 nucleotides
Psest_2712: Psest_2712 - Surface lipoprotein, at 2,902,437 to 2,903,135
_2712
Psest_2713: Psest_2713 - hypothetical protein, at 2,903,361 to 2,903,627
_2713
Psest_2714: Psest_2714 - 7-cyano-7-deazaguanine reductase, at 2,903,667 to 2,904,497
_2714
Psest_2715: Psest_2715 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 2,904,591 to 2,905,370
_2715
Psest_2716: Psest_2716 - ABC-type multidrug transport system, ATPase component, at 2,905,367 to 2,906,296
_2716
Position (kb)
2903
2904
2905 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2902.671 kb on - strand, within Psest_2712 at 2902.671 kb on - strand, within Psest_2712 at 2902.671 kb on - strand, within Psest_2712 at 2902.671 kb on - strand, within Psest_2712 at 2902.699 kb on + strand, within Psest_2712 at 2902.700 kb on - strand, within Psest_2712 at 2902.914 kb on - strand, within Psest_2712 at 2902.981 kb on + strand, within Psest_2712 at 2902.981 kb on + strand, within Psest_2712 at 2902.981 kb on + strand, within Psest_2712 at 2902.982 kb on - strand, within Psest_2712 at 2902.982 kb on - strand, within Psest_2712 at 2902.982 kb on - strand, within Psest_2712 at 2902.982 kb on - strand, within Psest_2712 at 2902.982 kb on - strand, within Psest_2712 at 2902.982 kb on - strand, within Psest_2712 at 2902.982 kb on - strand, within Psest_2712 at 2903.150 kb on - strand at 2903.150 kb on - strand at 2903.150 kb on - strand at 2903.153 kb on + strand at 2903.154 kb on - strand at 2903.154 kb on - strand at 2903.190 kb on + strand at 2903.190 kb on + strand at 2903.190 kb on + strand at 2903.192 kb on + strand at 2903.192 kb on + strand at 2903.192 kb on + strand at 2903.192 kb on + strand at 2903.193 kb on - strand at 2903.193 kb on - strand at 2903.240 kb on + strand at 2903.240 kb on + strand at 2903.240 kb on + strand at 2903.240 kb on + strand at 2903.240 kb on + strand at 2903.241 kb on - strand at 2903.241 kb on - strand at 2903.241 kb on - strand at 2903.452 kb on + strand, within Psest_2713 at 2903.453 kb on - strand, within Psest_2713 at 2903.456 kb on + strand, within Psest_2713 at 2903.456 kb on + strand, within Psest_2713 at 2903.456 kb on + strand, within Psest_2713 at 2903.456 kb on + strand, within Psest_2713 at 2903.456 kb on + strand, within Psest_2713 at 2903.456 kb on + strand, within Psest_2713 at 2903.456 kb on + strand, within Psest_2713 at 2903.456 kb on + strand, within Psest_2713 at 2903.457 kb on - strand, within Psest_2713 at 2903.457 kb on - strand, within Psest_2713 at 2903.457 kb on - strand, within Psest_2713 at 2903.752 kb on + strand, within Psest_2714 at 2903.788 kb on - strand, within Psest_2714 at 2904.035 kb on - strand, within Psest_2714 at 2904.226 kb on + strand, within Psest_2714 at 2904.362 kb on - strand, within Psest_2714 at 2904.440 kb on - strand at 2904.440 kb on - strand at 2904.640 kb on + strand at 2904.640 kb on + strand at 2904.687 kb on - strand, within Psest_2715 at 2904.797 kb on - strand, within Psest_2715 at 2904.797 kb on - strand, within Psest_2715 at 2904.797 kb on - strand, within Psest_2715 at 2904.797 kb on - strand, within Psest_2715 at 2905.088 kb on + strand, within Psest_2715 at 2905.180 kb on + strand, within Psest_2715 at 2905.180 kb on + strand, within Psest_2715 at 2905.180 kb on + strand, within Psest_2715 at 2905.181 kb on - strand, within Psest_2715 at 2905.181 kb on - strand, within Psest_2715 at 2905.181 kb on - strand, within Psest_2715 at 2905.181 kb on - strand, within Psest_2715 at 2905.181 kb on - strand, within Psest_2715 at 2905.181 kb on - strand, within Psest_2715 at 2905.181 kb on - strand, within Psest_2715 at 2905.189 kb on + strand, within Psest_2715 at 2905.190 kb on - strand, within Psest_2715 at 2905.190 kb on - strand, within Psest_2715 at 2905.250 kb on - strand, within Psest_2715 at 2905.250 kb on - strand, within Psest_2715 at 2905.250 kb on - strand, within Psest_2715 at 2905.250 kb on - strand, within Psest_2715 at 2905.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 2,902,671 - Psest_2712 0.33 +0.1 2,902,671 - Psest_2712 0.33 -0.2 2,902,671 - Psest_2712 0.33 +1.1 2,902,671 - Psest_2712 0.33 -0.3 2,902,699 + Psest_2712 0.37 +0.4 2,902,700 - Psest_2712 0.38 -1.8 2,902,914 - Psest_2712 0.68 -2.3 2,902,981 + Psest_2712 0.78 -0.6 2,902,981 + Psest_2712 0.78 +0.4 2,902,981 + Psest_2712 0.78 -1.7 2,902,982 - Psest_2712 0.78 -0.3 2,902,982 - Psest_2712 0.78 -0.5 2,902,982 - Psest_2712 0.78 -0.8 2,902,982 - Psest_2712 0.78 +0.0 2,902,982 - Psest_2712 0.78 -0.6 2,902,982 - Psest_2712 0.78 +0.6 2,902,982 - Psest_2712 0.78 -1.7 2,903,150 - -0.4 2,903,150 - +1.0 2,903,150 - +1.0 2,903,153 + +1.4 2,903,154 - +0.0 2,903,154 - -0.2 2,903,190 + +0.4 2,903,190 + -0.5 2,903,190 + +0.6 2,903,192 + -0.1 2,903,192 + +0.2 2,903,192 + +0.3 2,903,192 + -0.3 2,903,193 - -1.1 2,903,193 - -0.1 2,903,240 + +0.2 2,903,240 + +0.6 2,903,240 + -0.1 2,903,240 + +0.7 2,903,240 + +0.8 2,903,241 - +0.4 2,903,241 - -0.6 2,903,241 - +0.0 2,903,452 + Psest_2713 0.34 -0.6 2,903,453 - Psest_2713 0.34 +0.1 2,903,456 + Psest_2713 0.36 +3.0 2,903,456 + Psest_2713 0.36 +0.2 2,903,456 + Psest_2713 0.36 +0.2 2,903,456 + Psest_2713 0.36 -0.7 2,903,456 + Psest_2713 0.36 +0.6 2,903,456 + Psest_2713 0.36 +0.5 2,903,456 + Psest_2713 0.36 +0.2 2,903,456 + Psest_2713 0.36 +0.3 2,903,457 - Psest_2713 0.36 +0.0 2,903,457 - Psest_2713 0.36 -0.6 2,903,457 - Psest_2713 0.36 -1.2 2,903,752 + Psest_2714 0.10 +1.4 2,903,788 - Psest_2714 0.15 +1.1 2,904,035 - Psest_2714 0.44 +0.8 2,904,226 + Psest_2714 0.67 +1.4 2,904,362 - Psest_2714 0.84 +1.4 2,904,440 - -0.6 2,904,440 - +0.4 2,904,640 + +0.3 2,904,640 + -0.3 2,904,687 - Psest_2715 0.12 -0.4 2,904,797 - Psest_2715 0.26 -0.1 2,904,797 - Psest_2715 0.26 +0.8 2,904,797 - Psest_2715 0.26 -0.2 2,904,797 - Psest_2715 0.26 +0.3 2,905,088 + Psest_2715 0.64 -0.5 2,905,180 + Psest_2715 0.76 -0.3 2,905,180 + Psest_2715 0.76 -0.8 2,905,180 + Psest_2715 0.76 +0.1 2,905,181 - Psest_2715 0.76 +0.2 2,905,181 - Psest_2715 0.76 -0.2 2,905,181 - Psest_2715 0.76 +0.4 2,905,181 - Psest_2715 0.76 +0.1 2,905,181 - Psest_2715 0.76 -0.4 2,905,181 - Psest_2715 0.76 +0.1 2,905,181 - Psest_2715 0.76 +0.7 2,905,189 + Psest_2715 0.77 -0.7 2,905,190 - Psest_2715 0.77 -0.0 2,905,190 - Psest_2715 0.77 +2.0 2,905,250 - Psest_2715 0.84 +0.0 2,905,250 - Psest_2715 0.84 -0.1 2,905,250 - Psest_2715 0.84 +0.8 2,905,250 - Psest_2715 0.84 -1.7 2,905,304 - +0.3
Or see this region's nucleotide sequence