Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2714

Experiment: Anaerobic 500 uM Zinc chloride sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2712 and Psest_2713 are separated by 225 nucleotidesPsest_2713 and Psest_2714 are separated by 39 nucleotidesPsest_2714 and Psest_2715 are separated by 93 nucleotidesPsest_2715 and Psest_2716 overlap by 4 nucleotides Psest_2712: Psest_2712 - Surface lipoprotein, at 2,902,437 to 2,903,135 _2712 Psest_2713: Psest_2713 - hypothetical protein, at 2,903,361 to 2,903,627 _2713 Psest_2714: Psest_2714 - 7-cyano-7-deazaguanine reductase, at 2,903,667 to 2,904,497 _2714 Psest_2715: Psest_2715 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 2,904,591 to 2,905,370 _2715 Psest_2716: Psest_2716 - ABC-type multidrug transport system, ATPase component, at 2,905,367 to 2,906,296 _2716 Position (kb) 2903 2904 2905Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2902.671 kb on - strand, within Psest_2712at 2902.671 kb on - strand, within Psest_2712at 2902.671 kb on - strand, within Psest_2712at 2902.671 kb on - strand, within Psest_2712at 2902.699 kb on + strand, within Psest_2712at 2902.700 kb on - strand, within Psest_2712at 2902.914 kb on - strand, within Psest_2712at 2902.981 kb on + strand, within Psest_2712at 2902.981 kb on + strand, within Psest_2712at 2902.981 kb on + strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2903.150 kb on - strandat 2903.150 kb on - strandat 2903.150 kb on - strandat 2903.153 kb on + strandat 2903.154 kb on - strandat 2903.154 kb on - strandat 2903.190 kb on + strandat 2903.190 kb on + strandat 2903.190 kb on + strandat 2903.192 kb on + strandat 2903.192 kb on + strandat 2903.192 kb on + strandat 2903.192 kb on + strandat 2903.193 kb on - strandat 2903.193 kb on - strandat 2903.240 kb on + strandat 2903.240 kb on + strandat 2903.240 kb on + strandat 2903.240 kb on + strandat 2903.240 kb on + strandat 2903.241 kb on - strandat 2903.241 kb on - strandat 2903.241 kb on - strandat 2903.452 kb on + strand, within Psest_2713at 2903.453 kb on - strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.457 kb on - strand, within Psest_2713at 2903.457 kb on - strand, within Psest_2713at 2903.457 kb on - strand, within Psest_2713at 2903.752 kb on + strand, within Psest_2714at 2903.788 kb on - strand, within Psest_2714at 2904.035 kb on - strand, within Psest_2714at 2904.226 kb on + strand, within Psest_2714at 2904.362 kb on - strand, within Psest_2714at 2904.440 kb on - strandat 2904.440 kb on - strandat 2904.640 kb on + strandat 2904.640 kb on + strandat 2904.687 kb on - strand, within Psest_2715at 2904.797 kb on - strand, within Psest_2715at 2904.797 kb on - strand, within Psest_2715at 2904.797 kb on - strand, within Psest_2715at 2904.797 kb on - strand, within Psest_2715at 2905.088 kb on + strand, within Psest_2715at 2905.180 kb on + strand, within Psest_2715at 2905.180 kb on + strand, within Psest_2715at 2905.180 kb on + strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.189 kb on + strand, within Psest_2715at 2905.190 kb on - strand, within Psest_2715at 2905.190 kb on - strand, within Psest_2715at 2905.250 kb on - strand, within Psest_2715at 2905.250 kb on - strand, within Psest_2715at 2905.250 kb on - strand, within Psest_2715at 2905.250 kb on - strand, within Psest_2715at 2905.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2
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2,902,671 - Psest_2712 0.33 +0.1
2,902,671 - Psest_2712 0.33 -0.2
2,902,671 - Psest_2712 0.33 +1.1
2,902,671 - Psest_2712 0.33 -0.3
2,902,699 + Psest_2712 0.37 +0.4
2,902,700 - Psest_2712 0.38 -1.8
2,902,914 - Psest_2712 0.68 -2.3
2,902,981 + Psest_2712 0.78 -0.6
2,902,981 + Psest_2712 0.78 +0.4
2,902,981 + Psest_2712 0.78 -1.7
2,902,982 - Psest_2712 0.78 -0.3
2,902,982 - Psest_2712 0.78 -0.5
2,902,982 - Psest_2712 0.78 -0.8
2,902,982 - Psest_2712 0.78 +0.0
2,902,982 - Psest_2712 0.78 -0.6
2,902,982 - Psest_2712 0.78 +0.6
2,902,982 - Psest_2712 0.78 -1.7
2,903,150 - -0.4
2,903,150 - +1.0
2,903,150 - +1.0
2,903,153 + +1.4
2,903,154 - +0.0
2,903,154 - -0.2
2,903,190 + +0.4
2,903,190 + -0.5
2,903,190 + +0.6
2,903,192 + -0.1
2,903,192 + +0.2
2,903,192 + +0.3
2,903,192 + -0.3
2,903,193 - -1.1
2,903,193 - -0.1
2,903,240 + +0.2
2,903,240 + +0.6
2,903,240 + -0.1
2,903,240 + +0.7
2,903,240 + +0.8
2,903,241 - +0.4
2,903,241 - -0.6
2,903,241 - +0.0
2,903,452 + Psest_2713 0.34 -0.6
2,903,453 - Psest_2713 0.34 +0.1
2,903,456 + Psest_2713 0.36 +3.0
2,903,456 + Psest_2713 0.36 +0.2
2,903,456 + Psest_2713 0.36 +0.2
2,903,456 + Psest_2713 0.36 -0.7
2,903,456 + Psest_2713 0.36 +0.6
2,903,456 + Psest_2713 0.36 +0.5
2,903,456 + Psest_2713 0.36 +0.2
2,903,456 + Psest_2713 0.36 +0.3
2,903,457 - Psest_2713 0.36 +0.0
2,903,457 - Psest_2713 0.36 -0.6
2,903,457 - Psest_2713 0.36 -1.2
2,903,752 + Psest_2714 0.10 +1.4
2,903,788 - Psest_2714 0.15 +1.1
2,904,035 - Psest_2714 0.44 +0.8
2,904,226 + Psest_2714 0.67 +1.4
2,904,362 - Psest_2714 0.84 +1.4
2,904,440 - -0.6
2,904,440 - +0.4
2,904,640 + +0.3
2,904,640 + -0.3
2,904,687 - Psest_2715 0.12 -0.4
2,904,797 - Psest_2715 0.26 -0.1
2,904,797 - Psest_2715 0.26 +0.8
2,904,797 - Psest_2715 0.26 -0.2
2,904,797 - Psest_2715 0.26 +0.3
2,905,088 + Psest_2715 0.64 -0.5
2,905,180 + Psest_2715 0.76 -0.3
2,905,180 + Psest_2715 0.76 -0.8
2,905,180 + Psest_2715 0.76 +0.1
2,905,181 - Psest_2715 0.76 +0.2
2,905,181 - Psest_2715 0.76 -0.2
2,905,181 - Psest_2715 0.76 +0.4
2,905,181 - Psest_2715 0.76 +0.1
2,905,181 - Psest_2715 0.76 -0.4
2,905,181 - Psest_2715 0.76 +0.1
2,905,181 - Psest_2715 0.76 +0.7
2,905,189 + Psest_2715 0.77 -0.7
2,905,190 - Psest_2715 0.77 -0.0
2,905,190 - Psest_2715 0.77 +2.0
2,905,250 - Psest_2715 0.84 +0.0
2,905,250 - Psest_2715 0.84 -0.1
2,905,250 - Psest_2715 0.84 +0.8
2,905,250 - Psest_2715 0.84 -1.7
2,905,304 - +0.3

Or see this region's nucleotide sequence