Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2616 and Psest_2617 are separated by 1 nucleotides Psest_2617 and Psest_2618 are separated by 10 nucleotides Psest_2618 and Psest_2619 overlap by 4 nucleotides
Psest_2616: Psest_2616 - Tfp pilus assembly protein PilF, at 2,798,607 to 2,799,650
_2616
Psest_2617: Psest_2617 - Flp pilus assembly protein TadC, at 2,799,652 to 2,800,620
_2617
Psest_2618: Psest_2618 - Flp pilus assembly protein TadB, at 2,800,631 to 2,801,617
_2618
Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038
_2619
Position (kb)
2800
2801
2802 Strain fitness (log2 ratio)
-1
0
1 at 2799.818 kb on + strand, within Psest_2617 at 2800.067 kb on - strand, within Psest_2617 at 2800.067 kb on - strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.143 kb on - strand, within Psest_2617 at 2800.143 kb on - strand, within Psest_2617 at 2800.287 kb on - strand, within Psest_2617 at 2800.613 kb on + strand at 2800.613 kb on + strand at 2800.613 kb on + strand at 2800.614 kb on - strand at 2800.614 kb on - strand at 2800.743 kb on + strand, within Psest_2618 at 2800.744 kb on - strand, within Psest_2618 at 2800.838 kb on + strand, within Psest_2618 at 2801.013 kb on + strand, within Psest_2618 at 2801.084 kb on + strand, within Psest_2618 at 2801.084 kb on + strand, within Psest_2618 at 2801.329 kb on - strand, within Psest_2618 at 2801.421 kb on + strand, within Psest_2618 at 2801.422 kb on - strand, within Psest_2618 at 2801.422 kb on - strand, within Psest_2618 at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.596 kb on - strand at 2801.596 kb on - strand at 2801.724 kb on - strand at 2802.058 kb on + strand, within Psest_2619 at 2802.058 kb on + strand, within Psest_2619 at 2802.058 kb on + strand, within Psest_2619 at 2802.059 kb on - strand, within Psest_2619 at 2802.067 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 2,799,818 + Psest_2617 0.17 +0.2 2,800,067 - Psest_2617 0.43 -0.4 2,800,067 - Psest_2617 0.43 +0.1 2,800,142 + Psest_2617 0.51 -0.7 2,800,142 + Psest_2617 0.51 -0.4 2,800,142 + Psest_2617 0.51 -0.2 2,800,142 + Psest_2617 0.51 +0.1 2,800,142 + Psest_2617 0.51 +0.2 2,800,142 + Psest_2617 0.51 -0.2 2,800,142 + Psest_2617 0.51 +1.0 2,800,143 - Psest_2617 0.51 -0.4 2,800,143 - Psest_2617 0.51 -0.1 2,800,287 - Psest_2617 0.66 +0.9 2,800,613 + -0.0 2,800,613 + +0.5 2,800,613 + +0.1 2,800,614 - -0.7 2,800,614 - +0.3 2,800,743 + Psest_2618 0.11 +1.4 2,800,744 - Psest_2618 0.11 +0.5 2,800,838 + Psest_2618 0.21 +0.5 2,801,013 + Psest_2618 0.39 +1.4 2,801,084 + Psest_2618 0.46 +0.1 2,801,084 + Psest_2618 0.46 +0.1 2,801,329 - Psest_2618 0.71 -0.4 2,801,421 + Psest_2618 0.80 -0.7 2,801,422 - Psest_2618 0.80 +0.4 2,801,422 - Psest_2618 0.80 +0.3 2,801,595 + -0.8 2,801,595 + +0.8 2,801,595 + +0.2 2,801,595 + -1.5 2,801,596 - -0.7 2,801,596 - +1.0 2,801,724 - -1.2 2,802,058 + Psest_2619 0.31 +0.1 2,802,058 + Psest_2619 0.31 +0.9 2,802,058 + Psest_2619 0.31 -0.4 2,802,059 - Psest_2619 0.31 -0.3 2,802,067 - Psest_2619 0.32 +0.5 2,802,068 - Psest_2619 0.32 +0.8 2,802,068 - Psest_2619 0.32 +0.6 2,802,068 - Psest_2619 0.32 -0.3 2,802,617 + Psest_2619 0.70 +0.8 2,802,617 + Psest_2619 0.70 +0.4 2,802,617 + Psest_2619 0.70 -0.2
Or see this region's nucleotide sequence