Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2618

Experiment: Anaerobic 500 uM Zinc chloride sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2616 and Psest_2617 are separated by 1 nucleotidesPsest_2617 and Psest_2618 are separated by 10 nucleotidesPsest_2618 and Psest_2619 overlap by 4 nucleotides Psest_2616: Psest_2616 - Tfp pilus assembly protein PilF, at 2,798,607 to 2,799,650 _2616 Psest_2617: Psest_2617 - Flp pilus assembly protein TadC, at 2,799,652 to 2,800,620 _2617 Psest_2618: Psest_2618 - Flp pilus assembly protein TadB, at 2,800,631 to 2,801,617 _2618 Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038 _2619 Position (kb) 2800 2801 2802Strain fitness (log2 ratio) -1 0 1at 2799.818 kb on + strand, within Psest_2617at 2800.067 kb on - strand, within Psest_2617at 2800.067 kb on - strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.142 kb on + strand, within Psest_2617at 2800.143 kb on - strand, within Psest_2617at 2800.143 kb on - strand, within Psest_2617at 2800.287 kb on - strand, within Psest_2617at 2800.613 kb on + strandat 2800.613 kb on + strandat 2800.613 kb on + strandat 2800.614 kb on - strandat 2800.614 kb on - strandat 2800.743 kb on + strand, within Psest_2618at 2800.744 kb on - strand, within Psest_2618at 2800.838 kb on + strand, within Psest_2618at 2801.013 kb on + strand, within Psest_2618at 2801.084 kb on + strand, within Psest_2618at 2801.084 kb on + strand, within Psest_2618at 2801.329 kb on - strand, within Psest_2618at 2801.421 kb on + strand, within Psest_2618at 2801.422 kb on - strand, within Psest_2618at 2801.422 kb on - strand, within Psest_2618at 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.596 kb on - strandat 2801.596 kb on - strandat 2801.724 kb on - strandat 2802.058 kb on + strand, within Psest_2619at 2802.058 kb on + strand, within Psest_2619at 2802.058 kb on + strand, within Psest_2619at 2802.059 kb on - strand, within Psest_2619at 2802.067 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2
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2,799,818 + Psest_2617 0.17 +0.2
2,800,067 - Psest_2617 0.43 -0.4
2,800,067 - Psest_2617 0.43 +0.1
2,800,142 + Psest_2617 0.51 -0.7
2,800,142 + Psest_2617 0.51 -0.4
2,800,142 + Psest_2617 0.51 -0.2
2,800,142 + Psest_2617 0.51 +0.1
2,800,142 + Psest_2617 0.51 +0.2
2,800,142 + Psest_2617 0.51 -0.2
2,800,142 + Psest_2617 0.51 +1.0
2,800,143 - Psest_2617 0.51 -0.4
2,800,143 - Psest_2617 0.51 -0.1
2,800,287 - Psest_2617 0.66 +0.9
2,800,613 + -0.0
2,800,613 + +0.5
2,800,613 + +0.1
2,800,614 - -0.7
2,800,614 - +0.3
2,800,743 + Psest_2618 0.11 +1.4
2,800,744 - Psest_2618 0.11 +0.5
2,800,838 + Psest_2618 0.21 +0.5
2,801,013 + Psest_2618 0.39 +1.4
2,801,084 + Psest_2618 0.46 +0.1
2,801,084 + Psest_2618 0.46 +0.1
2,801,329 - Psest_2618 0.71 -0.4
2,801,421 + Psest_2618 0.80 -0.7
2,801,422 - Psest_2618 0.80 +0.4
2,801,422 - Psest_2618 0.80 +0.3
2,801,595 + -0.8
2,801,595 + +0.8
2,801,595 + +0.2
2,801,595 + -1.5
2,801,596 - -0.7
2,801,596 - +1.0
2,801,724 - -1.2
2,802,058 + Psest_2619 0.31 +0.1
2,802,058 + Psest_2619 0.31 +0.9
2,802,058 + Psest_2619 0.31 -0.4
2,802,059 - Psest_2619 0.31 -0.3
2,802,067 - Psest_2619 0.32 +0.5
2,802,068 - Psest_2619 0.32 +0.8
2,802,068 - Psest_2619 0.32 +0.6
2,802,068 - Psest_2619 0.32 -0.3
2,802,617 + Psest_2619 0.70 +0.8
2,802,617 + Psest_2619 0.70 +0.4
2,802,617 + Psest_2619 0.70 -0.2

Or see this region's nucleotide sequence