Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2152 and Psest_2153 overlap by 4 nucleotides Psest_2153 and Psest_2154 are separated by 22 nucleotides Psest_2154 and Psest_2155 are separated by 10 nucleotides Psest_2155 and Psest_2156 are separated by 347 nucleotides
Psest_2152: Psest_2152 - formate dehydrogenase, beta subunit, Fe-S containing, at 2,300,285 to 2,301,223
_2152
Psest_2153: Psest_2153 - formate dehydrogenase, gamma subunit, at 2,301,220 to 2,301,924
_2153
Psest_2154: Psest_2154 - formate dehydrogenase accessory protein FdhE, at 2,301,947 to 2,302,894
_2154
Psest_2155: Psest_2155 - hypothetical protein, at 2,302,905 to 2,303,069
_2155
Psest_2156: Psest_2156 - Glycosidases, at 2,303,417 to 2,305,429
_2156
Position (kb)
2301
2302
2303 Strain fitness (log2 ratio)
-2
-1
0
1 at 2300.969 kb on + strand, within Psest_2152 at 2300.969 kb on + strand, within Psest_2152 at 2300.969 kb on + strand, within Psest_2152 at 2300.969 kb on + strand, within Psest_2152 at 2300.970 kb on - strand, within Psest_2152 at 2300.970 kb on - strand, within Psest_2152 at 2301.002 kb on + strand, within Psest_2152 at 2301.003 kb on - strand, within Psest_2152 at 2301.003 kb on - strand, within Psest_2152 at 2301.119 kb on + strand, within Psest_2152 at 2301.119 kb on + strand, within Psest_2152 at 2301.119 kb on + strand, within Psest_2152 at 2301.119 kb on + strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.120 kb on - strand, within Psest_2152 at 2301.236 kb on + strand at 2301.236 kb on + strand at 2301.236 kb on + strand at 2301.237 kb on - strand at 2301.237 kb on - strand at 2301.237 kb on - strand at 2301.337 kb on + strand, within Psest_2153 at 2301.337 kb on + strand, within Psest_2153 at 2301.338 kb on - strand, within Psest_2153 at 2301.403 kb on + strand, within Psest_2153 at 2301.403 kb on + strand, within Psest_2153 at 2301.403 kb on + strand, within Psest_2153 at 2301.577 kb on + strand, within Psest_2153 at 2301.577 kb on + strand, within Psest_2153 at 2301.739 kb on + strand, within Psest_2153 at 2301.830 kb on - strand, within Psest_2153 at 2302.147 kb on - strand, within Psest_2154 at 2302.147 kb on - strand, within Psest_2154 at 2302.297 kb on - strand, within Psest_2154 at 2302.297 kb on - strand, within Psest_2154 at 2302.673 kb on + strand, within Psest_2154 at 2302.673 kb on + strand, within Psest_2154 at 2302.673 kb on + strand, within Psest_2154 at 2302.748 kb on + strand, within Psest_2154 at 2302.748 kb on + strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.865 kb on + strand at 2302.865 kb on + strand at 2302.866 kb on - strand at 2302.866 kb on - strand at 2302.893 kb on - strand at 2303.662 kb on - strand, within Psest_2156
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 2,300,969 + Psest_2152 0.73 -0.7 2,300,969 + Psest_2152 0.73 +0.7 2,300,969 + Psest_2152 0.73 -0.1 2,300,969 + Psest_2152 0.73 +0.5 2,300,970 - Psest_2152 0.73 +0.3 2,300,970 - Psest_2152 0.73 -0.9 2,301,002 + Psest_2152 0.76 +1.3 2,301,003 - Psest_2152 0.76 +0.1 2,301,003 - Psest_2152 0.76 +0.3 2,301,119 + Psest_2152 0.89 +0.6 2,301,119 + Psest_2152 0.89 +0.2 2,301,119 + Psest_2152 0.89 +0.2 2,301,119 + Psest_2152 0.89 +0.4 2,301,120 - Psest_2152 0.89 -0.4 2,301,120 - Psest_2152 0.89 -0.6 2,301,120 - Psest_2152 0.89 -0.3 2,301,120 - Psest_2152 0.89 +0.5 2,301,120 - Psest_2152 0.89 +0.5 2,301,236 + +0.0 2,301,236 + +0.6 2,301,236 + -0.1 2,301,237 - -0.0 2,301,237 - +0.2 2,301,237 - -0.1 2,301,337 + Psest_2153 0.17 -0.2 2,301,337 + Psest_2153 0.17 +1.3 2,301,338 - Psest_2153 0.17 -1.7 2,301,403 + Psest_2153 0.26 -0.3 2,301,403 + Psest_2153 0.26 -0.1 2,301,403 + Psest_2153 0.26 -0.1 2,301,577 + Psest_2153 0.51 +0.5 2,301,577 + Psest_2153 0.51 +0.1 2,301,739 + Psest_2153 0.74 -0.1 2,301,830 - Psest_2153 0.87 +0.4 2,302,147 - Psest_2154 0.21 +0.4 2,302,147 - Psest_2154 0.21 +0.6 2,302,297 - Psest_2154 0.37 +0.2 2,302,297 - Psest_2154 0.37 +0.4 2,302,673 + Psest_2154 0.77 +0.2 2,302,673 + Psest_2154 0.77 +0.7 2,302,673 + Psest_2154 0.77 +1.0 2,302,748 + Psest_2154 0.84 -1.8 2,302,748 + Psest_2154 0.84 +0.1 2,302,749 - Psest_2154 0.85 +0.3 2,302,749 - Psest_2154 0.85 +0.0 2,302,749 - Psest_2154 0.85 -2.1 2,302,865 + -1.0 2,302,865 + +0.1 2,302,866 - -0.3 2,302,866 - -1.0 2,302,893 - -0.1 2,303,662 - Psest_2156 0.12 +0.0
Or see this region's nucleotide sequence