Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1924 and Psest_1925 are separated by 73 nucleotides Psest_1925 and Psest_1926 are separated by 25 nucleotides
Psest_1924: Psest_1924 - adhesin-associated MmpL efflux pump (from data) , at 2,032,905 to 2,035,259
_1924
Psest_1925: Psest_1925 - uroporphyrin-III C-methyltransferase, at 2,035,333 to 2,036,070
_1925
Psest_1926: Psest_1926 - Uncharacterized anaerobic dehydrogenase, at 2,036,096 to 2,038,801
_1926
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2034.344 kb on - strand, within Psest_1924 at 2034.445 kb on + strand, within Psest_1924 at 2034.445 kb on + strand, within Psest_1924 at 2034.446 kb on - strand, within Psest_1924 at 2034.446 kb on - strand, within Psest_1924 at 2034.446 kb on - strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.792 kb on + strand, within Psest_1924 at 2034.793 kb on - strand, within Psest_1924 at 2034.793 kb on - strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2035.038 kb on + strand at 2035.039 kb on - strand at 2035.039 kb on - strand at 2035.041 kb on + strand at 2035.041 kb on + strand at 2035.042 kb on - strand at 2035.042 kb on - strand at 2035.042 kb on - strand at 2035.042 kb on - strand at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.848 kb on - strand, within Psest_1925 at 2036.258 kb on - strand at 2036.258 kb on - strand at 2036.768 kb on + strand, within Psest_1926 at 2036.768 kb on + strand, within Psest_1926 at 2036.768 kb on + strand, within Psest_1926 at 2036.768 kb on + strand, within Psest_1926 at 2036.769 kb on - strand, within Psest_1926 at 2036.769 kb on - strand, within Psest_1926 at 2036.769 kb on - strand, within Psest_1926 at 2036.769 kb on - strand, within Psest_1926
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 2,034,344 - Psest_1924 0.61 +0.7 2,034,445 + Psest_1924 0.65 +1.3 2,034,445 + Psest_1924 0.65 +0.2 2,034,446 - Psest_1924 0.65 +0.4 2,034,446 - Psest_1924 0.65 -0.0 2,034,446 - Psest_1924 0.65 -0.1 2,034,579 + Psest_1924 0.71 +0.1 2,034,579 + Psest_1924 0.71 -0.1 2,034,579 + Psest_1924 0.71 +0.3 2,034,579 + Psest_1924 0.71 -0.2 2,034,579 + Psest_1924 0.71 +0.1 2,034,579 + Psest_1924 0.71 -0.1 2,034,579 + Psest_1924 0.71 -0.1 2,034,579 + Psest_1924 0.71 -0.4 2,034,579 + Psest_1924 0.71 +2.3 2,034,579 + Psest_1924 0.71 -0.1 2,034,580 - Psest_1924 0.71 +0.7 2,034,580 - Psest_1924 0.71 -0.2 2,034,580 - Psest_1924 0.71 -0.3 2,034,580 - Psest_1924 0.71 +0.3 2,034,580 - Psest_1924 0.71 -1.0 2,034,580 - Psest_1924 0.71 -0.0 2,034,792 + Psest_1924 0.80 +0.5 2,034,793 - Psest_1924 0.80 +0.5 2,034,793 - Psest_1924 0.80 +0.2 2,034,981 + Psest_1924 0.88 -0.2 2,034,981 + Psest_1924 0.88 +0.3 2,034,981 + Psest_1924 0.88 -0.2 2,034,981 + Psest_1924 0.88 +0.3 2,034,981 + Psest_1924 0.88 -1.3 2,034,981 + Psest_1924 0.88 +0.7 2,034,981 + Psest_1924 0.88 +0.7 2,034,981 + Psest_1924 0.88 -0.1 2,034,981 + Psest_1924 0.88 -0.1 2,034,981 + Psest_1924 0.88 +0.3 2,034,981 + Psest_1924 0.88 +0.5 2,034,981 + Psest_1924 0.88 -0.0 2,034,982 - Psest_1924 0.88 +0.4 2,034,982 - Psest_1924 0.88 +1.5 2,034,982 - Psest_1924 0.88 -0.2 2,034,982 - Psest_1924 0.88 +0.9 2,034,982 - Psest_1924 0.88 +0.2 2,034,982 - Psest_1924 0.88 -0.2 2,034,987 + Psest_1924 0.88 +1.0 2,034,987 + Psest_1924 0.88 +0.1 2,034,987 + Psest_1924 0.88 +0.5 2,034,987 + Psest_1924 0.88 +0.3 2,034,987 + Psest_1924 0.88 +0.5 2,034,987 + Psest_1924 0.88 +0.6 2,034,987 + Psest_1924 0.88 -0.4 2,034,987 + Psest_1924 0.88 +0.4 2,034,987 + Psest_1924 0.88 -0.8 2,034,987 + Psest_1924 0.88 -0.2 2,034,988 - Psest_1924 0.88 -0.0 2,034,988 - Psest_1924 0.88 +0.1 2,034,988 - Psest_1924 0.88 +0.3 2,034,988 - Psest_1924 0.88 -1.3 2,034,988 - Psest_1924 0.88 -0.1 2,034,988 - Psest_1924 0.88 +0.9 2,034,988 - Psest_1924 0.88 +1.0 2,034,988 - Psest_1924 0.88 -0.1 2,034,988 - Psest_1924 0.88 +0.8 2,034,988 - Psest_1924 0.88 +1.2 2,035,038 + +0.6 2,035,039 - +0.4 2,035,039 - +0.4 2,035,041 + +1.3 2,035,041 + -0.2 2,035,042 - +1.1 2,035,042 - +0.9 2,035,042 - -0.4 2,035,042 - +0.7 2,035,571 + Psest_1925 0.32 +0.0 2,035,571 + Psest_1925 0.32 -0.0 2,035,571 + Psest_1925 0.32 -0.0 2,035,571 + Psest_1925 0.32 +0.9 2,035,571 + Psest_1925 0.32 +0.5 2,035,571 + Psest_1925 0.32 +0.6 2,035,571 + Psest_1925 0.32 +0.5 2,035,571 + Psest_1925 0.32 +0.9 2,035,571 + Psest_1925 0.32 +0.3 2,035,571 + Psest_1925 0.32 -0.2 2,035,571 + Psest_1925 0.32 +0.4 2,035,571 + Psest_1925 0.32 -0.2 2,035,571 + Psest_1925 0.32 +2.1 2,035,571 + Psest_1925 0.32 +0.7 2,035,572 - Psest_1925 0.32 +0.6 2,035,572 - Psest_1925 0.32 +0.3 2,035,572 - Psest_1925 0.32 +0.3 2,035,572 - Psest_1925 0.32 +1.5 2,035,572 - Psest_1925 0.32 -0.2 2,035,572 - Psest_1925 0.32 -0.1 2,035,572 - Psest_1925 0.32 +0.7 2,035,572 - Psest_1925 0.32 +1.3 2,035,572 - Psest_1925 0.32 -0.3 2,035,572 - Psest_1925 0.32 -0.1 2,035,572 - Psest_1925 0.32 -0.5 2,035,572 - Psest_1925 0.32 +0.7 2,035,572 - Psest_1925 0.32 -0.3 2,035,572 - Psest_1925 0.32 -0.4 2,035,572 - Psest_1925 0.32 +0.4 2,035,572 - Psest_1925 0.32 -0.6 2,035,572 - Psest_1925 0.32 +0.9 2,035,572 - Psest_1925 0.32 -1.0 2,035,572 - Psest_1925 0.32 -0.2 2,035,848 - Psest_1925 0.70 +0.0 2,036,258 - +0.1 2,036,258 - +0.2 2,036,768 + Psest_1926 0.25 -0.7 2,036,768 + Psest_1926 0.25 -0.1 2,036,768 + Psest_1926 0.25 -0.2 2,036,768 + Psest_1926 0.25 -1.8 2,036,769 - Psest_1926 0.25 +0.2 2,036,769 - Psest_1926 0.25 -0.3 2,036,769 - Psest_1926 0.25 -0.5 2,036,769 - Psest_1926 0.25 -1.3
Or see this region's nucleotide sequence