Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1762

Experiment: Anaerobic 500 uM Zinc chloride sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1759 and Psest_1760 are separated by 1 nucleotidesPsest_1760 and Psest_1761 overlap by 4 nucleotidesPsest_1761 and Psest_1762 overlap by 4 nucleotidesPsest_1762 and Psest_1763 are separated by 18 nucleotidesPsest_1763 and Psest_1764 are separated by 143 nucleotides Psest_1759: Psest_1759 - c-type cytochrome biogenesis protein CcmF, at 1,860,339 to 1,862,312 _1759 Psest_1760: Psest_1760 - periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily, at 1,862,314 to 1,862,844 _1760 Psest_1761: Psest_1761 - Uncharacterized protein involved in biosynthesis of c-type cytochromes, at 1,862,841 to 1,863,314 _1761 Psest_1762: Psest_1762 - cytochrome c-type biogenesis protein CcmI, at 1,863,311 to 1,864,519 _1762 Psest_1763: Psest_1763 - hypothetical protein, at 1,864,538 to 1,864,978 _1763 Psest_1764: Psest_1764 - hypothetical protein, at 1,865,122 to 1,865,418 _1764 Position (kb) 1863 1864 1865Strain fitness (log2 ratio) -1 0 1at 1864.053 kb on + strand, within Psest_1762at 1864.314 kb on + strand, within Psest_1762at 1864.315 kb on - strand, within Psest_1762at 1864.533 kb on + strandat 1864.533 kb on + strandat 1864.569 kb on + strandat 1864.569 kb on + strandat 1864.569 kb on + strandat 1864.569 kb on + strandat 1864.570 kb on - strandat 1864.570 kb on - strandat 1864.570 kb on - strandat 1864.756 kb on + strand, within Psest_1763at 1864.800 kb on + strand, within Psest_1763at 1864.800 kb on + strand, within Psest_1763at 1864.801 kb on - strand, within Psest_1763at 1864.833 kb on - strand, within Psest_1763at 1864.874 kb on + strand, within Psest_1763at 1864.875 kb on - strand, within Psest_1763at 1864.877 kb on + strand, within Psest_1763at 1865.003 kb on + strandat 1865.016 kb on - strandat 1865.409 kb on - strandat 1865.423 kb on + strandat 1865.424 kb on - strandat 1865.424 kb on - strandat 1865.424 kb on - strandat 1865.424 kb on - strandat 1865.460 kb on + strandat 1865.460 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2
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1,864,053 + Psest_1762 0.61 +0.6
1,864,314 + Psest_1762 0.83 +0.3
1,864,315 - Psest_1762 0.83 +0.1
1,864,533 + +0.4
1,864,533 + -0.4
1,864,569 + -0.5
1,864,569 + +0.6
1,864,569 + -0.3
1,864,569 + +0.7
1,864,570 - +0.1
1,864,570 - -0.5
1,864,570 - +0.3
1,864,756 + Psest_1763 0.49 +0.2
1,864,800 + Psest_1763 0.59 +0.4
1,864,800 + Psest_1763 0.59 -0.0
1,864,801 - Psest_1763 0.60 -0.5
1,864,833 - Psest_1763 0.67 -0.9
1,864,874 + Psest_1763 0.76 +0.1
1,864,875 - Psest_1763 0.76 +0.6
1,864,877 + Psest_1763 0.77 +0.0
1,865,003 + -0.7
1,865,016 - +0.2
1,865,409 - -0.8
1,865,423 + +0.6
1,865,424 - -0.3
1,865,424 - +0.9
1,865,424 - -0.2
1,865,424 - -0.7
1,865,460 + -0.6
1,865,460 + -0.2

Or see this region's nucleotide sequence