Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1629 and Psest_1630 are separated by 6 nucleotides Psest_1630 and Psest_1631 are separated by 96 nucleotides Psest_1631 and Psest_1632 are separated by 0 nucleotides Psest_1632 and Psest_1633 are separated by 179 nucleotides
Psest_1629: Psest_1629 - hypothetical protein, at 1,731,030 to 1,731,410
_1629
Psest_1630: Psest_1630 - Transcriptional regulator, at 1,731,417 to 1,732,271
_1630
Psest_1631: Psest_1631 - Uncharacterized conserved small protein, at 1,732,368 to 1,732,604
_1631
Psest_1632: Psest_1632 - Predicted permeases, at 1,732,605 to 1,733,360
_1632
Psest_1633: Psest_1633 - Protein of unknown function (DUF3365)., at 1,733,540 to 1,734,097
_1633
Position (kb)
1732
1733 Strain fitness (log2 ratio)
-1
0
1
2 at 1731.419 kb on - strand at 1731.440 kb on + strand at 1731.442 kb on + strand at 1731.443 kb on - strand at 1731.443 kb on - strand at 1731.443 kb on - strand at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.544 kb on - strand, within Psest_1630 at 1731.639 kb on - strand, within Psest_1630 at 1731.640 kb on + strand, within Psest_1630 at 1731.641 kb on - strand, within Psest_1630 at 1731.796 kb on - strand, within Psest_1630 at 1731.796 kb on - strand, within Psest_1630 at 1731.796 kb on - strand, within Psest_1630 at 1731.861 kb on + strand, within Psest_1630 at 1731.861 kb on + strand, within Psest_1630 at 1731.861 kb on + strand, within Psest_1630 at 1731.861 kb on + strand, within Psest_1630 at 1731.862 kb on - strand, within Psest_1630 at 1731.862 kb on - strand, within Psest_1630 at 1731.862 kb on - strand, within Psest_1630 at 1731.955 kb on + strand, within Psest_1630 at 1731.955 kb on + strand, within Psest_1630 at 1732.063 kb on - strand, within Psest_1630 at 1732.063 kb on - strand, within Psest_1630 at 1732.262 kb on - strand at 1732.322 kb on + strand at 1732.373 kb on + strand at 1732.374 kb on - strand at 1732.394 kb on + strand, within Psest_1631 at 1732.394 kb on + strand, within Psest_1631 at 1732.395 kb on - strand, within Psest_1631 at 1732.699 kb on + strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.700 kb on - strand, within Psest_1632 at 1732.792 kb on + strand, within Psest_1632 at 1732.793 kb on - strand, within Psest_1632 at 1732.793 kb on - strand, within Psest_1632 at 1733.352 kb on + strand at 1733.352 kb on + strand at 1733.352 kb on + strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.353 kb on - strand at 1733.461 kb on + strand at 1733.461 kb on + strand at 1733.461 kb on + strand at 1733.462 kb on - strand at 1733.462 kb on - strand at 1733.462 kb on - strand at 1733.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 1,731,419 - +0.4 1,731,440 + +0.2 1,731,442 + +0.2 1,731,443 - -1.3 1,731,443 - -0.1 1,731,443 - -1.0 1,731,543 + Psest_1630 0.15 +0.1 1,731,543 + Psest_1630 0.15 +0.3 1,731,543 + Psest_1630 0.15 +0.1 1,731,543 + Psest_1630 0.15 -0.5 1,731,544 - Psest_1630 0.15 +0.4 1,731,639 - Psest_1630 0.26 +1.0 1,731,640 + Psest_1630 0.26 -0.2 1,731,641 - Psest_1630 0.26 -0.2 1,731,796 - Psest_1630 0.44 -0.1 1,731,796 - Psest_1630 0.44 +0.2 1,731,796 - Psest_1630 0.44 +0.3 1,731,861 + Psest_1630 0.52 +0.6 1,731,861 + Psest_1630 0.52 -0.6 1,731,861 + Psest_1630 0.52 +0.1 1,731,861 + Psest_1630 0.52 -0.4 1,731,862 - Psest_1630 0.52 -0.8 1,731,862 - Psest_1630 0.52 +0.5 1,731,862 - Psest_1630 0.52 -0.6 1,731,955 + Psest_1630 0.63 -0.3 1,731,955 + Psest_1630 0.63 -0.2 1,732,063 - Psest_1630 0.76 -0.9 1,732,063 - Psest_1630 0.76 +0.6 1,732,262 - -0.6 1,732,322 + -0.1 1,732,373 + -0.9 1,732,374 - +0.1 1,732,394 + Psest_1631 0.11 +2.0 1,732,394 + Psest_1631 0.11 -0.5 1,732,395 - Psest_1631 0.11 +0.1 1,732,699 + Psest_1632 0.12 -0.0 1,732,700 - Psest_1632 0.13 -0.4 1,732,700 - Psest_1632 0.13 +0.2 1,732,700 - Psest_1632 0.13 -0.5 1,732,792 + Psest_1632 0.25 -0.3 1,732,793 - Psest_1632 0.25 +0.1 1,732,793 - Psest_1632 0.25 -0.2 1,733,352 + +0.2 1,733,352 + +0.9 1,733,352 + +1.0 1,733,353 - -0.0 1,733,353 - +0.5 1,733,353 - +0.6 1,733,353 - +0.0 1,733,353 - +0.7 1,733,353 - -1.4 1,733,353 - +0.5 1,733,353 - -0.8 1,733,461 + -0.6 1,733,461 + +0.5 1,733,461 + +1.4 1,733,462 - -0.3 1,733,462 - +0.3 1,733,462 - -1.0 1,733,511 + +0.9
Or see this region's nucleotide sequence