Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1243

Experiment: Anaerobic 500 uM Zinc chloride sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1242 and Psest_1243 are separated by 42 nucleotidesPsest_1243 and Psest_1244 are separated by 64 nucleotides Psest_1242: Psest_1242 - tRNA-guanine transglycosylase, queuosine-34-forming, at 1,350,083 to 1,351,216 _1242 Psest_1243: Psest_1243 - preprotein translocase, YajC subunit, at 1,351,259 to 1,351,588 _1243 Psest_1244: Psest_1244 - protein-export membrane protein, SecD/SecF family, at 1,351,653 to 1,353,521 _1244 Position (kb) 1351 1352Strain fitness (log2 ratio) -1 0 1 2at 1350.271 kb on + strand, within Psest_1242at 1350.272 kb on - strand, within Psest_1242at 1350.661 kb on + strand, within Psest_1242at 1351.089 kb on + strand, within Psest_1242at 1351.089 kb on + strand, within Psest_1242at 1351.089 kb on + strand, within Psest_1242at 1351.093 kb on + strand, within Psest_1242at 1351.150 kb on + strandat 1351.150 kb on + strandat 1351.178 kb on + strandat 1351.638 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2
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1,350,271 + Psest_1242 0.17 -1.1
1,350,272 - Psest_1242 0.17 -1.3
1,350,661 + Psest_1242 0.51 -1.7
1,351,089 + Psest_1242 0.89 +0.5
1,351,089 + Psest_1242 0.89 -0.8
1,351,089 + Psest_1242 0.89 -1.7
1,351,093 + Psest_1242 0.89 +2.5
1,351,150 + +0.3
1,351,150 + -1.7
1,351,178 + -0.1
1,351,638 + +0.2

Or see this region's nucleotide sequence