Experiment: Anaerobic 500 uM Zinc chloride sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1114 and Psest_1115 are separated by 21 nucleotides Psest_1115 and Psest_1116 overlap by 8 nucleotides Psest_1116 and Psest_1117 are separated by 84 nucleotides Psest_1117 and Psest_1118 are separated by 57 nucleotides
Psest_1114: Psest_1114 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 1,208,940 to 1,209,767
_1114
Psest_1115: Psest_1115 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2, at 1,209,789 to 1,210,538
_1115
Psest_1116: Psest_1116 - glutamate racemase, at 1,210,531 to 1,211,325
_1116
Psest_1117: Psest_1117 - Lipid A 3-O-deacylase (PagL)., at 1,211,410 to 1,211,928
_1117
Psest_1118: Psest_1118 - Predicted Fe-S-cluster oxidoreductase, at 1,211,986 to 1,212,297
_1118
Position (kb)
1210
1211
1212 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1209.927 kb on + strand, within Psest_1115 at 1209.927 kb on + strand, within Psest_1115 at 1209.974 kb on + strand, within Psest_1115 at 1210.340 kb on + strand, within Psest_1115 at 1211.395 kb on + strand at 1211.395 kb on + strand at 1211.397 kb on + strand at 1211.397 kb on + strand at 1211.397 kb on + strand at 1211.398 kb on - strand at 1211.398 kb on - strand at 1211.617 kb on + strand, within Psest_1117 at 1211.618 kb on - strand, within Psest_1117 at 1211.677 kb on + strand, within Psest_1117 at 1211.677 kb on + strand, within Psest_1117 at 1211.678 kb on - strand, within Psest_1117 at 1211.707 kb on + strand, within Psest_1117 at 1211.707 kb on + strand, within Psest_1117 at 1211.707 kb on + strand, within Psest_1117 at 1211.745 kb on + strand, within Psest_1117 at 1211.855 kb on - strand, within Psest_1117 at 1211.926 kb on + strand at 1211.926 kb on + strand at 1211.926 kb on + strand at 1212.077 kb on + strand, within Psest_1118 at 1212.078 kb on - strand, within Psest_1118 at 1212.078 kb on - strand, within Psest_1118 at 1212.315 kb on + strand at 1212.315 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample2 remove 1,209,927 + Psest_1115 0.18 -3.7 1,209,927 + Psest_1115 0.18 -3.8 1,209,974 + Psest_1115 0.25 -3.3 1,210,340 + Psest_1115 0.73 -1.9 1,211,395 + -0.7 1,211,395 + -0.4 1,211,397 + -0.2 1,211,397 + +0.0 1,211,397 + -0.1 1,211,398 - +0.6 1,211,398 - -0.6 1,211,617 + Psest_1117 0.40 +0.1 1,211,618 - Psest_1117 0.40 +0.9 1,211,677 + Psest_1117 0.51 -0.0 1,211,677 + Psest_1117 0.51 +0.4 1,211,678 - Psest_1117 0.52 -0.9 1,211,707 + Psest_1117 0.57 +0.1 1,211,707 + Psest_1117 0.57 +0.3 1,211,707 + Psest_1117 0.57 +0.1 1,211,745 + Psest_1117 0.65 -0.0 1,211,855 - Psest_1117 0.86 -0.1 1,211,926 + +0.6 1,211,926 + -1.4 1,211,926 + +0.1 1,212,077 + Psest_1118 0.29 +0.7 1,212,078 - Psest_1118 0.29 +0.1 1,212,078 - Psest_1118 0.29 -0.3 1,212,315 + -0.4 1,212,315 + +0.1
Or see this region's nucleotide sequence