Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0613

Experiment: Anaerobic 500 uM Zinc chloride sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0612 and Psest_0613 are separated by 400 nucleotidesPsest_0613 and Psest_0614 are separated by 58 nucleotides Psest_0612: Psest_0612 - outer membrane porin, OprD family., at 661,933 to 663,252 _0612 Psest_0613: Psest_0613 - hypothetical protein, at 663,653 to 664,033 _0613 Psest_0614: Psest_0614 - Outer membrane protein, at 664,092 to 665,399 _0614 Position (kb) 663 664 665Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 662.673 kb on + strand, within Psest_0612at 662.673 kb on + strand, within Psest_0612at 662.808 kb on + strand, within Psest_0612at 662.809 kb on - strand, within Psest_0612at 662.818 kb on + strand, within Psest_0612at 662.818 kb on + strand, within Psest_0612at 662.818 kb on + strand, within Psest_0612at 662.819 kb on - strand, within Psest_0612at 662.819 kb on - strand, within Psest_0612at 662.819 kb on - strand, within Psest_0612at 662.819 kb on - strand, within Psest_0612at 662.819 kb on - strand, within Psest_0612at 663.021 kb on + strand, within Psest_0612at 663.021 kb on + strand, within Psest_0612at 663.021 kb on + strand, within Psest_0612at 663.022 kb on - strand, within Psest_0612at 663.022 kb on - strand, within Psest_0612at 663.022 kb on - strand, within Psest_0612at 663.022 kb on - strand, within Psest_0612at 663.022 kb on - strand, within Psest_0612at 663.120 kb on - strand, within Psest_0612at 663.133 kb on + strandat 663.266 kb on - strandat 663.266 kb on - strandat 663.266 kb on - strandat 663.266 kb on - strandat 663.266 kb on - strandat 663.266 kb on - strandat 663.266 kb on - strandat 663.270 kb on - strandat 663.270 kb on - strandat 663.270 kb on - strandat 663.422 kb on + strandat 663.455 kb on + strandat 663.456 kb on - strandat 663.456 kb on - strandat 663.459 kb on + strandat 663.486 kb on + strandat 663.486 kb on + strandat 663.527 kb on + strandat 663.528 kb on - strandat 663.528 kb on - strandat 663.599 kb on - strandat 663.605 kb on + strandat 663.605 kb on + strandat 663.605 kb on + strandat 663.606 kb on - strandat 663.606 kb on - strandat 663.624 kb on + strandat 663.625 kb on - strandat 663.625 kb on - strandat 663.625 kb on - strandat 663.681 kb on + strandat 663.883 kb on + strand, within Psest_0613at 663.883 kb on + strand, within Psest_0613at 663.883 kb on + strand, within Psest_0613at 663.884 kb on - strand, within Psest_0613at 663.885 kb on + strand, within Psest_0613at 663.885 kb on + strand, within Psest_0613at 663.885 kb on + strand, within Psest_0613at 663.886 kb on - strand, within Psest_0613at 663.886 kb on - strand, within Psest_0613at 663.913 kb on - strand, within Psest_0613at 663.915 kb on + strand, within Psest_0613at 663.947 kb on - strand, within Psest_0613at 663.947 kb on - strand, within Psest_0613at 663.947 kb on - strand, within Psest_0613at 663.950 kb on + strand, within Psest_0613at 663.950 kb on + strand, within Psest_0613at 663.950 kb on + strand, within Psest_0613at 663.950 kb on + strand, within Psest_0613at 663.950 kb on + strand, within Psest_0613at 663.951 kb on - strand, within Psest_0613at 663.951 kb on - strand, within Psest_0613at 663.985 kb on + strand, within Psest_0613at 663.986 kb on - strand, within Psest_0613at 663.986 kb on - strand, within Psest_0613at 663.986 kb on - strand, within Psest_0613at 664.025 kb on - strandat 664.025 kb on - strandat 664.042 kb on + strandat 664.042 kb on + strandat 664.042 kb on + strandat 664.042 kb on + strandat 664.042 kb on + strandat 664.042 kb on + strandat 664.042 kb on + strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.043 kb on - strandat 664.049 kb on - strandat 664.186 kb on + strandat 664.186 kb on + strandat 664.186 kb on + strandat 664.187 kb on - strandat 664.187 kb on - strandat 664.187 kb on - strandat 664.187 kb on - strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.205 kb on + strandat 664.206 kb on - strandat 664.206 kb on - strandat 664.206 kb on - strandat 664.206 kb on - strandat 664.206 kb on - strandat 664.234 kb on + strand, within Psest_0614at 664.235 kb on - strand, within Psest_0614at 664.243 kb on + strand, within Psest_0614at 664.243 kb on + strand, within Psest_0614at 664.321 kb on + strand, within Psest_0614at 664.321 kb on + strand, within Psest_0614at 664.321 kb on + strand, within Psest_0614at 664.321 kb on + strand, within Psest_0614at 664.322 kb on - strand, within Psest_0614at 664.322 kb on - strand, within Psest_0614at 664.325 kb on + strand, within Psest_0614at 664.325 kb on + strand, within Psest_0614at 664.354 kb on + strand, within Psest_0614at 664.480 kb on + strand, within Psest_0614at 664.481 kb on - strand, within Psest_0614at 664.481 kb on - strand, within Psest_0614at 664.481 kb on - strand, within Psest_0614at 664.495 kb on + strand, within Psest_0614at 664.495 kb on + strand, within Psest_0614at 664.495 kb on + strand, within Psest_0614at 664.495 kb on + strand, within Psest_0614at 664.495 kb on + strand, within Psest_0614at 664.496 kb on - strand, within Psest_0614at 664.540 kb on - strand, within Psest_0614at 664.542 kb on + strand, within Psest_0614at 664.542 kb on + strand, within Psest_0614at 664.542 kb on + strand, within Psest_0614at 664.542 kb on + strand, within Psest_0614at 664.543 kb on - strand, within Psest_0614at 664.543 kb on - strand, within Psest_0614at 664.543 kb on - strand, within Psest_0614at 664.543 kb on - strand, within Psest_0614at 664.543 kb on - strand, within Psest_0614at 664.543 kb on - strand, within Psest_0614at 664.553 kb on + strand, within Psest_0614at 664.554 kb on - strand, within Psest_0614at 664.554 kb on - strand, within Psest_0614at 664.699 kb on + strand, within Psest_0614at 664.699 kb on + strand, within Psest_0614at 664.699 kb on + strand, within Psest_0614at 664.700 kb on - strand, within Psest_0614at 664.789 kb on + strand, within Psest_0614at 664.789 kb on + strand, within Psest_0614at 664.789 kb on + strand, within Psest_0614at 664.789 kb on + strand, within Psest_0614at 664.790 kb on - strand, within Psest_0614at 664.828 kb on + strand, within Psest_0614at 664.828 kb on + strand, within Psest_0614at 664.829 kb on - strand, within Psest_0614at 664.839 kb on + strand, within Psest_0614at 664.840 kb on - strand, within Psest_0614at 664.840 kb on - strand, within Psest_0614at 664.909 kb on + strand, within Psest_0614at 664.937 kb on + strand, within Psest_0614at 664.938 kb on - strand, within Psest_0614at 664.954 kb on + strand, within Psest_0614at 664.954 kb on + strand, within Psest_0614at 664.954 kb on + strand, within Psest_0614at 664.954 kb on + strand, within Psest_0614at 664.954 kb on + strand, within Psest_0614at 664.954 kb on + strand, within Psest_0614at 664.955 kb on - strand, within Psest_0614at 664.955 kb on - strand, within Psest_0614at 664.955 kb on - strand, within Psest_0614at 664.955 kb on - strand, within Psest_0614at 664.955 kb on - strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.977 kb on + strand, within Psest_0614at 664.978 kb on - strand, within Psest_0614at 664.978 kb on - strand, within Psest_0614at 664.978 kb on - strand, within Psest_0614at 664.978 kb on - strand, within Psest_0614at 664.978 kb on - strand, within Psest_0614at 664.978 kb on - strand, within Psest_0614at 664.980 kb on - strand, within Psest_0614at 664.980 kb on - strand, within Psest_0614at 664.980 kb on - strand, within Psest_0614at 665.003 kb on + strand, within Psest_0614at 665.003 kb on + strand, within Psest_0614at 665.004 kb on - strand, within Psest_0614at 665.004 kb on - strand, within Psest_0614at 665.004 kb on - strand, within Psest_0614

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic 500 uM Zinc chloride sample1
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662,673 + Psest_0612 0.56 -0.1
662,673 + Psest_0612 0.56 -0.5
662,808 + Psest_0612 0.66 +0.1
662,809 - Psest_0612 0.66 +1.8
662,818 + Psest_0612 0.67 +1.9
662,818 + Psest_0612 0.67 +0.1
662,818 + Psest_0612 0.67 -0.0
662,819 - Psest_0612 0.67 +1.9
662,819 - Psest_0612 0.67 +1.9
662,819 - Psest_0612 0.67 +0.4
662,819 - Psest_0612 0.67 -0.1
662,819 - Psest_0612 0.67 -0.7
663,021 + Psest_0612 0.82 -0.1
663,021 + Psest_0612 0.82 -0.6
663,021 + Psest_0612 0.82 +0.5
663,022 - Psest_0612 0.82 -0.3
663,022 - Psest_0612 0.82 -0.0
663,022 - Psest_0612 0.82 -1.1
663,022 - Psest_0612 0.82 -0.4
663,022 - Psest_0612 0.82 -1.2
663,120 - Psest_0612 0.90 -0.8
663,133 + +0.5
663,266 - +0.7
663,266 - +0.4
663,266 - +0.5
663,266 - -0.9
663,266 - +0.4
663,266 - -0.7
663,266 - +0.6
663,270 - +0.3
663,270 - +1.2
663,270 - +0.2
663,422 + -2.6
663,455 + -3.6
663,456 - -3.0
663,456 - -2.7
663,459 + -1.5
663,486 + -1.3
663,486 + -2.2
663,527 + -1.5
663,528 - -1.8
663,528 - -4.0
663,599 - -3.6
663,605 + -0.4
663,605 + +0.6
663,605 + -0.4
663,606 - -0.4
663,606 - -4.4
663,624 + +0.7
663,625 - -2.5
663,625 - +0.3
663,625 - -2.5
663,681 + +0.9
663,883 + Psest_0613 0.60 -3.4
663,883 + Psest_0613 0.60 -4.1
663,883 + Psest_0613 0.60 -1.8
663,884 - Psest_0613 0.61 -2.8
663,885 + Psest_0613 0.61 -1.9
663,885 + Psest_0613 0.61 -2.5
663,885 + Psest_0613 0.61 -0.2
663,886 - Psest_0613 0.61 -1.7
663,886 - Psest_0613 0.61 -2.9
663,913 - Psest_0613 0.68 -2.4
663,915 + Psest_0613 0.69 -3.6
663,947 - Psest_0613 0.77 -1.5
663,947 - Psest_0613 0.77 -0.1
663,947 - Psest_0613 0.77 -2.8
663,950 + Psest_0613 0.78 -0.2
663,950 + Psest_0613 0.78 -3.1
663,950 + Psest_0613 0.78 -3.6
663,950 + Psest_0613 0.78 -2.5
663,950 + Psest_0613 0.78 -2.4
663,951 - Psest_0613 0.78 -2.0
663,951 - Psest_0613 0.78 -2.7
663,985 + Psest_0613 0.87 -2.1
663,986 - Psest_0613 0.87 -2.4
663,986 - Psest_0613 0.87 -5.0
663,986 - Psest_0613 0.87 -0.4
664,025 - -4.7
664,025 - -3.8
664,042 + -4.4
664,042 + -1.1
664,042 + -2.2
664,042 + -3.5
664,042 + -4.6
664,042 + -1.5
664,042 + -4.0
664,043 - -1.8
664,043 - -3.0
664,043 - -2.9
664,043 - -3.1
664,043 - -3.2
664,043 - -3.1
664,043 - -3.9
664,043 - -2.0
664,043 - -2.8
664,043 - -1.8
664,043 - -2.4
664,049 - -3.2
664,186 + -2.6
664,186 + -3.4
664,186 + -3.2
664,187 - -3.1
664,187 - -0.4
664,187 - -3.7
664,187 - -4.7
664,205 + -1.3
664,205 + -1.9
664,205 + -2.8
664,205 + -2.7
664,205 + -3.4
664,205 + -2.3
664,205 + -3.1
664,205 + -1.5
664,205 + -3.4
664,205 + -4.3
664,205 + -3.5
664,205 + -4.2
664,205 + -1.4
664,206 - -2.3
664,206 - -2.8
664,206 - -1.1
664,206 - -4.0
664,206 - -2.5
664,234 + Psest_0614 0.11 -3.8
664,235 - Psest_0614 0.11 -2.3
664,243 + Psest_0614 0.12 -1.7
664,243 + Psest_0614 0.12 -1.3
664,321 + Psest_0614 0.18 -0.4
664,321 + Psest_0614 0.18 -1.3
664,321 + Psest_0614 0.18 -4.3
664,321 + Psest_0614 0.18 -1.5
664,322 - Psest_0614 0.18 -1.7
664,322 - Psest_0614 0.18 -2.8
664,325 + Psest_0614 0.18 -2.5
664,325 + Psest_0614 0.18 -3.1
664,354 + Psest_0614 0.20 -0.4
664,480 + Psest_0614 0.30 -3.8
664,481 - Psest_0614 0.30 -4.5
664,481 - Psest_0614 0.30 -1.3
664,481 - Psest_0614 0.30 -2.2
664,495 + Psest_0614 0.31 -3.8
664,495 + Psest_0614 0.31 +0.3
664,495 + Psest_0614 0.31 -2.1
664,495 + Psest_0614 0.31 -3.3
664,495 + Psest_0614 0.31 -1.1
664,496 - Psest_0614 0.31 -1.7
664,540 - Psest_0614 0.34 -2.5
664,542 + Psest_0614 0.34 -2.3
664,542 + Psest_0614 0.34 -2.7
664,542 + Psest_0614 0.34 -2.5
664,542 + Psest_0614 0.34 -3.2
664,543 - Psest_0614 0.34 -2.8
664,543 - Psest_0614 0.34 +0.9
664,543 - Psest_0614 0.34 -4.8
664,543 - Psest_0614 0.34 -0.7
664,543 - Psest_0614 0.34 -2.4
664,543 - Psest_0614 0.34 -4.1
664,553 + Psest_0614 0.35 -3.2
664,554 - Psest_0614 0.35 -2.7
664,554 - Psest_0614 0.35 -0.9
664,699 + Psest_0614 0.46 -2.7
664,699 + Psest_0614 0.46 -4.0
664,699 + Psest_0614 0.46 -4.0
664,700 - Psest_0614 0.46 -3.5
664,789 + Psest_0614 0.53 -1.8
664,789 + Psest_0614 0.53 -3.5
664,789 + Psest_0614 0.53 -3.4
664,789 + Psest_0614 0.53 -0.4
664,790 - Psest_0614 0.53 -2.1
664,828 + Psest_0614 0.56 -0.1
664,828 + Psest_0614 0.56 -2.3
664,829 - Psest_0614 0.56 -4.0
664,839 + Psest_0614 0.57 -1.4
664,840 - Psest_0614 0.57 -2.6
664,840 - Psest_0614 0.57 +0.9
664,909 + Psest_0614 0.62 -2.8
664,937 + Psest_0614 0.65 -1.7
664,938 - Psest_0614 0.65 -1.7
664,954 + Psest_0614 0.66 -2.9
664,954 + Psest_0614 0.66 -3.4
664,954 + Psest_0614 0.66 -2.1
664,954 + Psest_0614 0.66 -4.3
664,954 + Psest_0614 0.66 -3.3
664,954 + Psest_0614 0.66 -3.8
664,955 - Psest_0614 0.66 -3.1
664,955 - Psest_0614 0.66 -3.5
664,955 - Psest_0614 0.66 -0.5
664,955 - Psest_0614 0.66 -4.2
664,955 - Psest_0614 0.66 -3.2
664,977 + Psest_0614 0.68 -3.2
664,977 + Psest_0614 0.68 -1.3
664,977 + Psest_0614 0.68 -3.8
664,977 + Psest_0614 0.68 -5.2
664,977 + Psest_0614 0.68 -0.4
664,977 + Psest_0614 0.68 -2.6
664,977 + Psest_0614 0.68 -3.7
664,977 + Psest_0614 0.68 -3.6
664,977 + Psest_0614 0.68 -2.9
664,977 + Psest_0614 0.68 -3.5
664,977 + Psest_0614 0.68 -0.4
664,978 - Psest_0614 0.68 -3.3
664,978 - Psest_0614 0.68 -0.9
664,978 - Psest_0614 0.68 +0.9
664,978 - Psest_0614 0.68 -0.1
664,978 - Psest_0614 0.68 -3.9
664,978 - Psest_0614 0.68 -1.4
664,980 - Psest_0614 0.68 -0.9
664,980 - Psest_0614 0.68 -4.2
664,980 - Psest_0614 0.68 -3.7
665,003 + Psest_0614 0.70 -0.7
665,003 + Psest_0614 0.70 +0.3
665,004 - Psest_0614 0.70 -3.7
665,004 - Psest_0614 0.70 -1.3
665,004 - Psest_0614 0.70 -2.9

Or see this region's nucleotide sequence