Experiment: Aerobic, with iron sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0025 and Psest_0026 are separated by 155 nucleotides Psest_0026 and Psest_0027 are separated by 52 nucleotides Psest_0027 and Psest_0028 are separated by 152 nucleotides
Psest_0025: Psest_0025 - DNA protecting protein DprA, at 25,790 to 26,887
_0025
Psest_0026: Psest_0026 - Putative translation factor (SUA5), at 27,043 to 27,600
_0026
Psest_0027: Psest_0027 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 27,653 to 28,630
_0027
Psest_0028: Psest_0028 - Coproporphyrinogen III oxidase, at 28,783 to 29,700
_0028
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.886 kb on - strand at 26.886 kb on - strand at 26.971 kb on + strand at 26.971 kb on + strand at 26.972 kb on - strand at 26.972 kb on - strand at 27.825 kb on + strand, within Psest_0027 at 27.990 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.040 kb on + strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.041 kb on - strand, within Psest_0027 at 28.066 kb on + strand, within Psest_0027 at 28.243 kb on - strand, within Psest_0027 at 28.243 kb on - strand, within Psest_0027 at 28.372 kb on - strand, within Psest_0027 at 28.477 kb on - strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.494 kb on + strand, within Psest_0027 at 28.495 kb on - strand, within Psest_0027 at 28.495 kb on - strand, within Psest_0027 at 28.703 kb on + strand at 28.703 kb on + strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.704 kb on - strand at 28.750 kb on - strand at 28.813 kb on + strand at 28.813 kb on + strand at 28.813 kb on + strand at 29.086 kb on + strand, within Psest_0028 at 29.087 kb on - strand, within Psest_0028 at 29.186 kb on - strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.410 kb on + strand, within Psest_0028 at 29.503 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.512 kb on + strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.513 kb on - strand, within Psest_0028 at 29.524 kb on + strand, within Psest_0028 at 29.611 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic, with iron sample1 remove 26,886 - +0.4 26,886 - -0.2 26,971 + -1.0 26,971 + +0.0 26,972 - -1.0 26,972 - -0.9 27,825 + Psest_0027 0.18 -0.5 27,990 + Psest_0027 0.34 -0.3 28,040 + Psest_0027 0.40 -0.2 28,040 + Psest_0027 0.40 -0.6 28,040 + Psest_0027 0.40 -0.5 28,040 + Psest_0027 0.40 +0.4 28,040 + Psest_0027 0.40 +0.4 28,041 - Psest_0027 0.40 +0.2 28,041 - Psest_0027 0.40 +1.4 28,041 - Psest_0027 0.40 +0.4 28,041 - Psest_0027 0.40 -1.0 28,041 - Psest_0027 0.40 +0.7 28,041 - Psest_0027 0.40 +0.1 28,041 - Psest_0027 0.40 -1.2 28,041 - Psest_0027 0.40 +0.8 28,041 - Psest_0027 0.40 +0.0 28,041 - Psest_0027 0.40 +0.3 28,041 - Psest_0027 0.40 -0.9 28,066 + Psest_0027 0.42 -0.0 28,243 - Psest_0027 0.60 -0.6 28,243 - Psest_0027 0.60 +0.2 28,372 - Psest_0027 0.74 -0.5 28,477 - Psest_0027 0.84 +0.5 28,494 + Psest_0027 0.86 -0.0 28,494 + Psest_0027 0.86 +0.5 28,494 + Psest_0027 0.86 +0.5 28,494 + Psest_0027 0.86 -0.4 28,494 + Psest_0027 0.86 -0.2 28,495 - Psest_0027 0.86 -0.7 28,495 - Psest_0027 0.86 -0.4 28,703 + -0.3 28,703 + +0.3 28,704 - +0.3 28,704 - -0.2 28,704 - +0.6 28,704 - -0.5 28,704 - +0.8 28,750 - -0.9 28,813 + +0.1 28,813 + -0.4 28,813 + -0.0 29,086 + Psest_0028 0.33 -0.6 29,087 - Psest_0028 0.33 +0.6 29,186 - Psest_0028 0.44 -0.4 29,410 + Psest_0028 0.68 +1.6 29,410 + Psest_0028 0.68 +1.0 29,410 + Psest_0028 0.68 +0.6 29,503 + Psest_0028 0.78 -0.2 29,512 + Psest_0028 0.79 +0.7 29,512 + Psest_0028 0.79 -2.0 29,512 + Psest_0028 0.79 +2.4 29,513 - Psest_0028 0.80 +0.6 29,513 - Psest_0028 0.80 -1.2 29,513 - Psest_0028 0.80 +2.5 29,513 - Psest_0028 0.80 -1.6 29,513 - Psest_0028 0.80 -0.3 29,513 - Psest_0028 0.80 +1.3 29,524 + Psest_0028 0.81 +0.2 29,611 + -0.6
Or see this region's nucleotide sequence