Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0073

Experiment: Lactate Nitrate anaeroibic, no iron sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0072 and Psest_0073 overlap by 4 nucleotidesPsest_0073 and Psest_0074 overlap by 4 nucleotidesPsest_0074 and Psest_0075 are separated by 316 nucleotidesPsest_0075 and Psest_0076 are separated by 57 nucleotides Psest_0072: Psest_0072 - hypothetical protein, at 73,209 to 74,363 _0072 Psest_0073: Psest_0073 - ABC-type multidrug transport system, ATPase and permease components, at 74,360 to 76,165 _0073 Psest_0074: Psest_0074 - hypothetical protein, at 76,162 to 76,377 _0074 Psest_0075: Psest_0075 - Uncharacterized conserved protein, at 76,694 to 76,909 _0075 Psest_0076: Psest_0076 - NhaP-type Na+/H+ and K+/H+ antiporters, at 76,967 to 78,331 _0076 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 73.419 kb on + strand, within Psest_0072at 73.420 kb on - strand, within Psest_0072at 73.611 kb on + strand, within Psest_0072at 73.611 kb on + strand, within Psest_0072at 73.611 kb on + strand, within Psest_0072at 73.611 kb on + strand, within Psest_0072at 73.611 kb on + strand, within Psest_0072at 73.612 kb on - strand, within Psest_0072at 73.612 kb on - strand, within Psest_0072at 73.612 kb on - strand, within Psest_0072at 73.612 kb on - strand, within Psest_0072at 73.612 kb on - strand, within Psest_0072at 73.612 kb on - strand, within Psest_0072at 73.665 kb on + strand, within Psest_0072at 73.665 kb on + strand, within Psest_0072at 73.666 kb on - strand, within Psest_0072at 73.666 kb on - strand, within Psest_0072at 73.666 kb on - strand, within Psest_0072at 73.666 kb on - strand, within Psest_0072at 73.666 kb on - strand, within Psest_0072at 73.923 kb on + strand, within Psest_0072at 73.923 kb on + strand, within Psest_0072at 73.924 kb on - strand, within Psest_0072at 73.924 kb on - strand, within Psest_0072at 73.924 kb on - strand, within Psest_0072at 73.947 kb on + strand, within Psest_0072at 73.947 kb on + strand, within Psest_0072at 73.947 kb on + strand, within Psest_0072at 73.947 kb on + strand, within Psest_0072at 73.948 kb on - strand, within Psest_0072at 73.948 kb on - strand, within Psest_0072at 73.948 kb on - strand, within Psest_0072at 73.948 kb on - strand, within Psest_0072at 73.948 kb on - strand, within Psest_0072at 73.948 kb on - strand, within Psest_0072at 73.948 kb on - strand, within Psest_0072at 73.950 kb on + strand, within Psest_0072at 73.950 kb on + strand, within Psest_0072at 73.950 kb on + strand, within Psest_0072at 73.951 kb on - strand, within Psest_0072at 74.118 kb on + strand, within Psest_0072at 74.119 kb on - strand, within Psest_0072at 74.119 kb on - strand, within Psest_0072at 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.441 kb on + strandat 74.442 kb on - strandat 74.442 kb on - strandat 74.442 kb on - strandat 74.442 kb on - strandat 74.442 kb on - strandat 74.535 kb on + strandat 74.535 kb on + strandat 74.536 kb on - strandat 74.810 kb on + strand, within Psest_0073at 74.810 kb on + strand, within Psest_0073at 74.810 kb on + strand, within Psest_0073at 74.810 kb on + strand, within Psest_0073at 74.811 kb on - strand, within Psest_0073at 75.135 kb on - strand, within Psest_0073at 75.135 kb on - strand, within Psest_0073at 75.135 kb on - strand, within Psest_0073at 75.487 kb on + strand, within Psest_0073at 75.689 kb on - strand, within Psest_0073at 76.172 kb on + strandat 76.173 kb on - strandat 76.173 kb on - strandat 76.258 kb on + strand, within Psest_0074at 76.338 kb on - strand, within Psest_0074at 76.338 kb on - strand, within Psest_0074at 76.442 kb on + strandat 76.443 kb on - strandat 76.521 kb on + strandat 76.521 kb on + strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.712 kb on + strandat 76.712 kb on + strandat 76.712 kb on + strandat 76.712 kb on + strandat 76.712 kb on + strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 77.090 kb on - strandat 77.090 kb on - strandat 77.127 kb on + strand, within Psest_0076at 77.127 kb on + strand, within Psest_0076at 77.127 kb on + strand, within Psest_0076at 77.136 kb on + strand, within Psest_0076at 77.136 kb on + strand, within Psest_0076at 77.137 kb on - strand, within Psest_0076at 77.137 kb on - strand, within Psest_0076at 77.137 kb on - strand, within Psest_0076at 77.137 kb on - strand, within Psest_0076at 77.139 kb on + strand, within Psest_0076at 77.139 kb on + strand, within Psest_0076at 77.140 kb on - strand, within Psest_0076at 77.140 kb on - strand, within Psest_0076at 77.140 kb on - strand, within Psest_0076

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate Nitrate anaeroibic, no iron sample3
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73,419 + Psest_0072 0.18 +0.5
73,420 - Psest_0072 0.18 +0.2
73,611 + Psest_0072 0.35 -0.2
73,611 + Psest_0072 0.35 -0.0
73,611 + Psest_0072 0.35 +0.8
73,611 + Psest_0072 0.35 -0.7
73,611 + Psest_0072 0.35 +0.2
73,612 - Psest_0072 0.35 +0.3
73,612 - Psest_0072 0.35 -0.1
73,612 - Psest_0072 0.35 -0.7
73,612 - Psest_0072 0.35 +0.2
73,612 - Psest_0072 0.35 +0.4
73,612 - Psest_0072 0.35 -0.4
73,665 + Psest_0072 0.39 -0.0
73,665 + Psest_0072 0.39 -0.8
73,666 - Psest_0072 0.40 +0.2
73,666 - Psest_0072 0.40 +0.8
73,666 - Psest_0072 0.40 -0.0
73,666 - Psest_0072 0.40 +0.3
73,666 - Psest_0072 0.40 +0.4
73,923 + Psest_0072 0.62 -0.6
73,923 + Psest_0072 0.62 -0.3
73,924 - Psest_0072 0.62 -2.2
73,924 - Psest_0072 0.62 -0.7
73,924 - Psest_0072 0.62 +0.5
73,947 + Psest_0072 0.64 -0.3
73,947 + Psest_0072 0.64 +0.8
73,947 + Psest_0072 0.64 -0.3
73,947 + Psest_0072 0.64 -0.0
73,948 - Psest_0072 0.64 +0.1
73,948 - Psest_0072 0.64 -1.1
73,948 - Psest_0072 0.64 +0.3
73,948 - Psest_0072 0.64 +0.4
73,948 - Psest_0072 0.64 +0.5
73,948 - Psest_0072 0.64 +0.1
73,948 - Psest_0072 0.64 +0.5
73,950 + Psest_0072 0.64 -0.2
73,950 + Psest_0072 0.64 -0.9
73,950 + Psest_0072 0.64 -0.0
73,951 - Psest_0072 0.64 -0.0
74,118 + Psest_0072 0.79 -0.5
74,119 - Psest_0072 0.79 -0.3
74,119 - Psest_0072 0.79 -0.4
74,441 + -0.9
74,441 + +0.4
74,441 + +0.1
74,441 + -0.1
74,441 + -0.0
74,441 + -0.3
74,441 + +0.3
74,441 + +0.0
74,441 + -0.1
74,441 + +0.4
74,441 + +0.3
74,441 + -1.4
74,442 - +0.6
74,442 - +0.6
74,442 - +0.5
74,442 - -0.3
74,442 - -0.0
74,535 + +1.0
74,535 + +0.2
74,536 - -0.6
74,810 + Psest_0073 0.25 +0.2
74,810 + Psest_0073 0.25 -0.7
74,810 + Psest_0073 0.25 -0.8
74,810 + Psest_0073 0.25 +0.2
74,811 - Psest_0073 0.25 -1.1
75,135 - Psest_0073 0.43 +0.1
75,135 - Psest_0073 0.43 +0.1
75,135 - Psest_0073 0.43 -1.6
75,487 + Psest_0073 0.62 -0.0
75,689 - Psest_0073 0.74 +0.2
76,172 + -0.2
76,173 - +0.3
76,173 - +0.1
76,258 + Psest_0074 0.44 +1.5
76,338 - Psest_0074 0.81 +0.2
76,338 - Psest_0074 0.81 +0.9
76,442 + +0.9
76,443 - -0.0
76,521 + -0.6
76,521 + -0.2
76,522 - -1.7
76,522 - +0.5
76,522 - +0.4
76,522 - +0.9
76,522 - +0.1
76,522 - -0.1
76,712 + -0.4
76,712 + -0.2
76,712 + +0.9
76,712 + +0.7
76,712 + +2.4
76,713 - +1.4
76,713 - -0.1
76,713 - -0.7
76,713 - +0.1
76,713 - -0.9
76,713 - +0.2
76,713 - +0.2
76,713 - +0.1
76,713 - -0.2
76,713 - +0.5
76,713 - -0.1
77,090 - +0.1
77,090 - +0.1
77,127 + Psest_0076 0.12 +0.3
77,127 + Psest_0076 0.12 +0.6
77,127 + Psest_0076 0.12 +0.3
77,136 + Psest_0076 0.12 -0.2
77,136 + Psest_0076 0.12 +0.2
77,137 - Psest_0076 0.12 -0.5
77,137 - Psest_0076 0.12 -0.1
77,137 - Psest_0076 0.12 -0.2
77,137 - Psest_0076 0.12 -1.1
77,139 + Psest_0076 0.13 +1.0
77,139 + Psest_0076 0.13 -0.0
77,140 - Psest_0076 0.13 +0.4
77,140 - Psest_0076 0.13 +0.8
77,140 - Psest_0076 0.13 +0.8

Or see this region's nucleotide sequence