Experiment: Lactate Nitrate anaeroibic, no iron sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2121 and Psest_2122 are separated by 8 nucleotides Psest_2122 and Psest_2123 are separated by 176 nucleotides
Psest_2121: Psest_2121 - Predicted ATPase, at 2,252,501 to 2,253,610
_2121
Psest_2122: Psest_2122 - Parvulin-like peptidyl-prolyl isomerase, at 2,253,619 to 2,253,897
_2122
Psest_2123: Psest_2123 - fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) , at 2,254,074 to 2,255,204
_2123
Position (kb)
2253
2254 Strain fitness (log2 ratio)
-1
0
1 at 2252.648 kb on + strand at 2252.648 kb on + strand, within Psest_2121 at 2252.649 kb on - strand, within Psest_2121 at 2252.649 kb on - strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2252.820 kb on + strand, within Psest_2121 at 2253.476 kb on + strand, within Psest_2121 at 2253.477 kb on - strand, within Psest_2121 at 2253.477 kb on - strand, within Psest_2121 at 2253.477 kb on - strand, within Psest_2121 at 2253.497 kb on + strand, within Psest_2121 at 2253.497 kb on + strand, within Psest_2121 at 2253.498 kb on - strand, within Psest_2121 at 2253.498 kb on - strand, within Psest_2121 at 2253.500 kb on - strand at 2253.530 kb on + strand at 2253.531 kb on - strand at 2253.531 kb on - strand at 2253.531 kb on - strand at 2253.531 kb on - strand at 2253.788 kb on + strand, within Psest_2122 at 2253.788 kb on + strand, within Psest_2122 at 2253.932 kb on + strand at 2254.088 kb on + strand at 2254.535 kb on - strand, within Psest_2123 at 2254.664 kb on + strand, within Psest_2123 at 2254.665 kb on - strand, within Psest_2123 at 2254.698 kb on + strand, within Psest_2123
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate Nitrate anaeroibic, no iron sample3 remove 2,252,648 + -0.6 2,252,648 + Psest_2121 0.13 +0.4 2,252,649 - Psest_2121 0.13 +0.2 2,252,649 - Psest_2121 0.13 +0.1 2,252,820 + Psest_2121 0.29 +0.1 2,252,820 + Psest_2121 0.29 +0.7 2,252,820 + Psest_2121 0.29 -0.2 2,252,820 + Psest_2121 0.29 +0.3 2,252,820 + Psest_2121 0.29 +0.5 2,252,820 + Psest_2121 0.29 +0.9 2,253,476 + Psest_2121 0.88 +0.0 2,253,477 - Psest_2121 0.88 -0.5 2,253,477 - Psest_2121 0.88 -0.2 2,253,477 - Psest_2121 0.88 +0.7 2,253,497 + Psest_2121 0.90 -0.1 2,253,497 + Psest_2121 0.90 +0.8 2,253,498 - Psest_2121 0.90 +1.0 2,253,498 - Psest_2121 0.90 +0.1 2,253,500 - +0.3 2,253,530 + +0.3 2,253,531 - +0.3 2,253,531 - +0.7 2,253,531 - +0.4 2,253,531 - -0.4 2,253,788 + Psest_2122 0.61 -0.2 2,253,788 + Psest_2122 0.61 -0.6 2,253,932 + -0.1 2,254,088 + +0.4 2,254,535 - Psest_2123 0.41 +0.4 2,254,664 + Psest_2123 0.52 +0.6 2,254,665 - Psest_2123 0.52 -0.1 2,254,698 + Psest_2123 0.55 -0.8
Or see this region's nucleotide sequence