Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0850

Experiment: Anaerobic, Glucose Nitrate sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0849 and Psest_0850 overlap by 4 nucleotidesPsest_0850 and Psest_0851 are separated by 72 nucleotides Psest_0849: Psest_0849 - 6-phosphogluconate dehydratase, at 918,635 to 920,461 _0849 Psest_0850: Psest_0850 - glucokinase, proteobacterial type, at 920,458 to 921,417 _0850 Psest_0851: Psest_0851 - Transcriptional regulators, at 921,490 to 922,359 _0851 Position (kb) 920 921 922Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 919.601 kb on - strand, within Psest_0849at 919.601 kb on - strand, within Psest_0849at 919.748 kb on - strand, within Psest_0849at 919.776 kb on - strand, within Psest_0849at 920.111 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.389 kb on + strandat 920.587 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.591 kb on - strand, within Psest_0850at 920.778 kb on + strand, within Psest_0850at 920.778 kb on + strand, within Psest_0850at 921.055 kb on + strand, within Psest_0850at 921.055 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.061 kb on - strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.453 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.456 kb on - strandat 921.456 kb on - strandat 921.542 kb on - strandat 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.797 kb on + strand, within Psest_0851at 922.067 kb on + strand, within Psest_0851at 922.067 kb on + strand, within Psest_0851at 922.068 kb on - strand, within Psest_0851at 922.068 kb on - strand, within Psest_0851at 922.348 kb on + strandat 922.399 kb on + strandat 922.399 kb on + strandat 922.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, Glucose Nitrate sample3
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919,601 - Psest_0849 0.53 -3.9
919,601 - Psest_0849 0.53 -0.5
919,748 - Psest_0849 0.61 -3.1
919,776 - Psest_0849 0.62 -4.6
920,111 + Psest_0849 0.81 -2.7
920,208 + Psest_0849 0.86 -1.7
920,208 + Psest_0849 0.86 -1.8
920,208 + Psest_0849 0.86 -3.6
920,208 + Psest_0849 0.86 -3.2
920,208 + Psest_0849 0.86 -3.1
920,208 + Psest_0849 0.86 -0.1
920,208 + Psest_0849 0.86 -2.0
920,208 + Psest_0849 0.86 -0.7
920,208 + Psest_0849 0.86 -4.2
920,208 + Psest_0849 0.86 -3.4
920,208 + Psest_0849 0.86 -3.8
920,208 + Psest_0849 0.86 -2.1
920,208 + Psest_0849 0.86 -3.7
920,209 - Psest_0849 0.86 -3.5
920,209 - Psest_0849 0.86 -2.1
920,209 - Psest_0849 0.86 -3.5
920,209 - Psest_0849 0.86 -3.9
920,209 - Psest_0849 0.86 -3.3
920,209 - Psest_0849 0.86 -2.8
920,209 - Psest_0849 0.86 -2.8
920,209 - Psest_0849 0.86 -3.1
920,209 - Psest_0849 0.86 -2.7
920,209 - Psest_0849 0.86 -4.0
920,209 - Psest_0849 0.86 -4.0
920,209 - Psest_0849 0.86 -0.8
920,209 - Psest_0849 0.86 -4.0
920,209 - Psest_0849 0.86 -0.7
920,209 - Psest_0849 0.86 -2.6
920,209 - Psest_0849 0.86 -3.0
920,389 + -2.9
920,587 + Psest_0850 0.13 -5.3
920,590 + Psest_0850 0.14 -2.7
920,590 + Psest_0850 0.14 -3.5
920,590 + Psest_0850 0.14 -2.9
920,590 + Psest_0850 0.14 -2.7
920,590 + Psest_0850 0.14 -1.7
920,591 - Psest_0850 0.14 -2.9
920,778 + Psest_0850 0.33 -1.6
920,778 + Psest_0850 0.33 -2.4
921,055 + Psest_0850 0.62 -2.2
921,055 + Psest_0850 0.62 -3.4
921,060 + Psest_0850 0.63 -3.1
921,060 + Psest_0850 0.63 -1.0
921,060 + Psest_0850 0.63 -0.4
921,061 - Psest_0850 0.63 -2.9
921,232 + Psest_0850 0.81 -4.6
921,232 + Psest_0850 0.81 -3.0
921,232 + Psest_0850 0.81 -2.0
921,232 + Psest_0850 0.81 -0.8
921,232 + Psest_0850 0.81 -3.0
921,232 + Psest_0850 0.81 -2.9
921,232 + Psest_0850 0.81 -3.5
921,232 + Psest_0850 0.81 -3.2
921,232 + Psest_0850 0.81 -3.0
921,232 + Psest_0850 0.81 -2.7
921,232 + Psest_0850 0.81 -1.8
921,232 + Psest_0850 0.81 -4.8
921,232 + Psest_0850 0.81 -2.7
921,233 - Psest_0850 0.81 -2.9
921,233 - Psest_0850 0.81 -1.6
921,233 - Psest_0850 0.81 -2.5
921,233 - Psest_0850 0.81 -4.1
921,233 - Psest_0850 0.81 -2.8
921,233 - Psest_0850 0.81 -2.8
921,233 - Psest_0850 0.81 -3.2
921,453 + -0.5
921,455 + -0.2
921,455 + +0.1
921,455 + +0.8
921,455 + -1.3
921,455 + -1.5
921,456 - +0.5
921,456 - -0.8
921,542 - -1.3
921,647 + Psest_0851 0.18 -0.5
921,647 + Psest_0851 0.18 -0.1
921,647 + Psest_0851 0.18 +0.8
921,647 + Psest_0851 0.18 +0.2
921,647 + Psest_0851 0.18 +0.3
921,647 + Psest_0851 0.18 -0.4
921,647 + Psest_0851 0.18 -0.5
921,647 + Psest_0851 0.18 -0.4
921,647 + Psest_0851 0.18 +0.7
921,647 + Psest_0851 0.18 -1.0
921,647 + Psest_0851 0.18 +0.5
921,647 + Psest_0851 0.18 -1.0
921,647 + Psest_0851 0.18 +0.3
921,647 + Psest_0851 0.18 +0.1
921,647 + Psest_0851 0.18 +0.1
921,647 + Psest_0851 0.18 +0.4
921,647 + Psest_0851 0.18 +0.3
921,647 + Psest_0851 0.18 -0.3
921,647 + Psest_0851 0.18 -0.4
921,647 + Psest_0851 0.18 +0.2
921,647 + Psest_0851 0.18 +0.2
921,647 + Psest_0851 0.18 +0.6
921,648 - Psest_0851 0.18 -0.8
921,648 - Psest_0851 0.18 -0.3
921,648 - Psest_0851 0.18 -0.5
921,648 - Psest_0851 0.18 +0.2
921,648 - Psest_0851 0.18 -0.0
921,648 - Psest_0851 0.18 -0.2
921,648 - Psest_0851 0.18 +0.0
921,648 - Psest_0851 0.18 -0.5
921,648 - Psest_0851 0.18 -0.9
921,648 - Psest_0851 0.18 +0.4
921,648 - Psest_0851 0.18 +0.0
921,648 - Psest_0851 0.18 -0.1
921,648 - Psest_0851 0.18 +0.5
921,648 - Psest_0851 0.18 +0.5
921,648 - Psest_0851 0.18 +0.1
921,648 - Psest_0851 0.18 -0.8
921,648 - Psest_0851 0.18 -0.3
921,648 - Psest_0851 0.18 +0.3
921,648 - Psest_0851 0.18 +0.3
921,648 - Psest_0851 0.18 -0.0
921,797 + Psest_0851 0.35 -0.0
922,067 + Psest_0851 0.66 -0.4
922,067 + Psest_0851 0.66 -0.4
922,068 - Psest_0851 0.66 +0.2
922,068 - Psest_0851 0.66 -0.1
922,348 + -2.2
922,399 + +0.5
922,399 + +0.2
922,399 + +0.1

Or see this region's nucleotide sequence