Experiment: Anaerobic, 100 nM, Mo 1 mM W sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2541 and Psest_2542 are separated by 7 nucleotides Psest_2542 and Psest_2543 overlap by 4 nucleotides Psest_2543 and Psest_2544 are separated by 99 nucleotides
Psest_2541: Psest_2541 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,721,096 to 2,721,797
_2541
Psest_2542: Psest_2542 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,721,805 to 2,722,578
_2542
Psest_2543: Psest_2543 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,722,575 to 2,723,321
_2543
Psest_2544: Psest_2544 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 2,723,421 to 2,724,410
_2544
Position (kb)
2722
2723
2724 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2721.657 kb on + strand, within Psest_2541 at 2721.657 kb on + strand, within Psest_2541 at 2722.391 kb on + strand, within Psest_2542 at 2722.392 kb on - strand, within Psest_2542 at 2722.541 kb on + strand at 2722.541 kb on + strand at 2722.542 kb on - strand at 2722.542 kb on - strand at 2722.738 kb on + strand, within Psest_2543 at 2722.738 kb on + strand, within Psest_2543 at 2722.945 kb on + strand, within Psest_2543 at 2722.948 kb on + strand, within Psest_2543 at 2722.948 kb on + strand, within Psest_2543 at 2722.948 kb on + strand, within Psest_2543 at 2722.980 kb on + strand, within Psest_2543 at 2723.074 kb on + strand, within Psest_2543 at 2723.298 kb on + strand at 2723.299 kb on - strand at 2723.299 kb on - strand at 2723.299 kb on - strand at 2723.299 kb on - strand at 2723.299 kb on - strand at 2723.299 kb on - strand at 2723.602 kb on - strand, within Psest_2544 at 2723.662 kb on + strand, within Psest_2544 at 2723.662 kb on + strand, within Psest_2544 at 2723.662 kb on + strand, within Psest_2544 at 2723.663 kb on - strand, within Psest_2544 at 2723.812 kb on - strand, within Psest_2544 at 2723.812 kb on - strand, within Psest_2544 at 2723.827 kb on + strand, within Psest_2544 at 2723.828 kb on - strand, within Psest_2544 at 2723.828 kb on - strand, within Psest_2544 at 2723.828 kb on - strand, within Psest_2544 at 2724.124 kb on - strand, within Psest_2544
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, 100 nM, Mo 1 mM W sample3 remove 2,721,657 + Psest_2541 0.80 -0.5 2,721,657 + Psest_2541 0.80 -1.4 2,722,391 + Psest_2542 0.76 -1.1 2,722,392 - Psest_2542 0.76 -1.1 2,722,541 + -1.6 2,722,541 + -1.9 2,722,542 - -1.7 2,722,542 - -2.4 2,722,738 + Psest_2543 0.22 -1.7 2,722,738 + Psest_2543 0.22 -2.2 2,722,945 + Psest_2543 0.50 -2.4 2,722,948 + Psest_2543 0.50 -2.0 2,722,948 + Psest_2543 0.50 -2.3 2,722,948 + Psest_2543 0.50 -3.4 2,722,980 + Psest_2543 0.54 -1.9 2,723,074 + Psest_2543 0.67 -1.9 2,723,298 + -2.4 2,723,299 - -1.3 2,723,299 - -1.0 2,723,299 - +1.8 2,723,299 - -2.3 2,723,299 - -1.3 2,723,299 - +0.5 2,723,602 - Psest_2544 0.18 -0.9 2,723,662 + Psest_2544 0.24 -1.2 2,723,662 + Psest_2544 0.24 -1.9 2,723,662 + Psest_2544 0.24 -2.3 2,723,663 - Psest_2544 0.24 -1.7 2,723,812 - Psest_2544 0.39 -2.0 2,723,812 - Psest_2544 0.39 -1.9 2,723,827 + Psest_2544 0.41 -2.8 2,723,828 - Psest_2544 0.41 -1.9 2,723,828 - Psest_2544 0.41 -1.0 2,723,828 - Psest_2544 0.41 -2.8 2,724,124 - Psest_2544 0.71 -1.2
Or see this region's nucleotide sequence