Experiment: Anaerobic, 100 nM, Mo 1 mM W sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0811 and Psest_0812 are separated by 170 nucleotides Psest_0812 and Psest_0813 are separated by 3 nucleotides Psest_0813 and Psest_0814 overlap by 17 nucleotides Psest_0814 and Psest_0815 are separated by 343 nucleotides
Psest_0811: Psest_0811 - heme d1 biosynthesis radical SAM protein NirJ, at 886,662 to 887,843
_0811
Psest_0812: Psest_0812 - hypothetical protein, at 888,014 to 888,262
_0812
Psest_0813: Psest_0813 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 888,266 to 888,853
_0813
Psest_0814: Psest_0814 - MoxR-like ATPases, at 888,837 to 889,649
_0814
Psest_0815: Psest_0815 - Cytochrome c, mono- and diheme variants, at 889,993 to 891,675
_0815
Position (kb) 888
889
890 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 887.955 kb on - strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.268 kb on - strand at 888.268 kb on - strand at 888.268 kb on - strand at 888.279 kb on + strand at 888.279 kb on + strand at 888.279 kb on + strand at 888.311 kb on - strand at 888.328 kb on - strand, within Psest_0813 at 888.460 kb on - strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.541 kb on - strand, within Psest_0813 at 888.605 kb on + strand, within Psest_0813 at 888.605 kb on + strand, within Psest_0813 at 888.606 kb on - strand, within Psest_0813 at 889.195 kb on + strand, within Psest_0814 at 889.195 kb on + strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.460 kb on - strand, within Psest_0814 at 889.598 kb on - strand at 889.598 kb on - strand at 889.658 kb on - strand at 889.658 kb on - strand at 889.658 kb on - strand at 889.765 kb on + strand at 889.765 kb on + strand at 889.766 kb on - strand at 889.766 kb on - strand at 889.900 kb on - strand at 889.950 kb on + strand at 889.954 kb on + strand at 889.954 kb on + strand at 889.955 kb on - strand at 889.955 kb on - strand at 889.955 kb on - strand at 889.982 kb on - strand at 890.008 kb on - strand at 890.008 kb on - strand at 890.013 kb on + strand at 890.040 kb on - strand at 890.040 kb on - strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.275 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.348 kb on - strand, within Psest_0815 at 890.348 kb on - strand, within Psest_0815 at 890.532 kb on + strand, within Psest_0815 at 890.532 kb on + strand, within Psest_0815 at 890.532 kb on + strand, within Psest_0815 at 890.533 kb on - strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.607 kb on + strand, within Psest_0815 at 890.607 kb on + strand, within Psest_0815
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, 100 nM, Mo 1 mM W sample1 remove 887,955 - +0.8 888,267 + -0.7 888,267 + +0.6 888,267 + +0.7 888,267 + -0.5 888,268 - -0.6 888,268 - -0.6 888,268 - -0.7 888,279 + -0.6 888,279 + -0.0 888,279 + +0.4 888,311 - -0.9 888,328 - Psest_0813 0.11 -0.1 888,460 - Psest_0813 0.33 -0.8 888,540 + Psest_0813 0.47 -0.3 888,540 + Psest_0813 0.47 -0.3 888,540 + Psest_0813 0.47 +0.5 888,540 + Psest_0813 0.47 -0.0 888,540 + Psest_0813 0.47 -0.3 888,540 + Psest_0813 0.47 -0.6 888,541 - Psest_0813 0.47 -0.4 888,605 + Psest_0813 0.58 +0.2 888,605 + Psest_0813 0.58 +0.1 888,606 - Psest_0813 0.58 -0.5 889,195 + Psest_0814 0.44 +1.4 889,195 + Psest_0814 0.44 -1.9 889,196 - Psest_0814 0.44 -2.4 889,196 - Psest_0814 0.44 -3.4 889,196 - Psest_0814 0.44 -2.0 889,460 - Psest_0814 0.77 -4.0 889,598 - -2.5 889,598 - -0.6 889,658 - -0.2 889,658 - -0.2 889,658 - -1.1 889,765 + +0.3 889,765 + +0.6 889,766 - -0.5 889,766 - -0.4 889,900 - -1.8 889,950 + -1.0 889,954 + -0.6 889,954 + -1.5 889,955 - -0.7 889,955 - -1.3 889,955 - -2.5 889,982 - -1.6 890,008 - -1.4 890,008 - -0.9 890,013 + -1.1 890,040 - -2.6 890,040 - -1.7 890,119 + -0.7 890,119 + -0.8 890,119 + -1.5 890,119 + -1.5 890,119 + -0.9 890,120 - -1.4 890,120 - -1.7 890,120 - -1.8 890,120 - -1.6 890,120 - -1.0 890,120 - -1.5 890,120 - -0.6 890,275 + Psest_0815 0.17 -0.6 890,302 + Psest_0815 0.18 -1.3 890,302 + Psest_0815 0.18 +0.0 890,302 + Psest_0815 0.18 -1.7 890,302 + Psest_0815 0.18 -0.5 890,302 + Psest_0815 0.18 -0.4 890,302 + Psest_0815 0.18 -0.7 890,302 + Psest_0815 0.18 -1.3 890,302 + Psest_0815 0.18 -1.6 890,303 - Psest_0815 0.18 +1.1 890,303 - Psest_0815 0.18 -2.4 890,303 - Psest_0815 0.18 -2.1 890,303 - Psest_0815 0.18 -0.9 890,303 - Psest_0815 0.18 +0.8 890,303 - Psest_0815 0.18 -0.9 890,348 - Psest_0815 0.21 -1.2 890,348 - Psest_0815 0.21 -1.4 890,532 + Psest_0815 0.32 -1.9 890,532 + Psest_0815 0.32 -1.1 890,532 + Psest_0815 0.32 -0.3 890,533 - Psest_0815 0.32 -2.1 890,605 + Psest_0815 0.36 -1.8 890,605 + Psest_0815 0.36 -1.6 890,605 + Psest_0815 0.36 -0.6 890,605 + Psest_0815 0.36 -1.1 890,605 + Psest_0815 0.36 -2.4 890,605 + Psest_0815 0.36 +0.9 890,605 + Psest_0815 0.36 -2.4 890,606 - Psest_0815 0.36 -0.7 890,606 - Psest_0815 0.36 -3.0 890,606 - Psest_0815 0.36 -0.6 890,606 - Psest_0815 0.36 -0.7 890,606 - Psest_0815 0.36 -2.0 890,606 - Psest_0815 0.36 -1.9 890,607 + Psest_0815 0.36 +0.7 890,607 + Psest_0815 0.36 -0.8
Or see this region's nucleotide sequence