Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3480

Experiment: Anaerobic, 100 nM, Mo 1 mM W sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3479 and Psest_3480 overlap by 4 nucleotidesPsest_3480 and Psest_3481 are separated by 243 nucleotides Psest_3479: Psest_3479 - molybdenum cofactor synthesis domain, at 3,648,205 to 3,649,437 _3479 Psest_3480: Psest_3480 - molybdenum cofactor biosynthesis protein B, proteobacterial, at 3,649,434 to 3,649,979 _3480 Psest_3481: Psest_3481 - molybdenum cofactor biosynthesis protein A, bacterial, at 3,650,223 to 3,651,212 _3481 Position (kb) 3649 3650Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3648.806 kb on + strand, within Psest_3479at 3648.821 kb on + strand, within Psest_3479at 3648.821 kb on + strand, within Psest_3479at 3648.822 kb on - strand, within Psest_3479at 3648.822 kb on - strand, within Psest_3479at 3648.822 kb on - strand, within Psest_3479at 3649.053 kb on + strand, within Psest_3479at 3649.054 kb on - strand, within Psest_3479at 3649.817 kb on + strand, within Psest_3480at 3649.817 kb on + strand, within Psest_3480at 3649.896 kb on - strand, within Psest_3480at 3649.896 kb on - strand, within Psest_3480at 3650.053 kb on + strandat 3650.053 kb on + strandat 3650.053 kb on + strandat 3650.053 kb on + strandat 3650.054 kb on - strandat 3650.054 kb on - strandat 3650.054 kb on - strandat 3650.054 kb on - strandat 3650.054 kb on - strandat 3650.054 kb on - strandat 3650.054 kb on - strandat 3650.054 kb on - strandat 3650.054 kb on - strandat 3650.179 kb on + strandat 3650.515 kb on + strand, within Psest_3481at 3650.515 kb on + strand, within Psest_3481at 3650.516 kb on - strand, within Psest_3481at 3650.583 kb on + strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481at 3650.584 kb on - strand, within Psest_3481

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, 100 nM, Mo 1 mM W sample1
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3,648,806 + Psest_3479 0.49 -2.6
3,648,821 + Psest_3479 0.50 -3.9
3,648,821 + Psest_3479 0.50 -3.7
3,648,822 - Psest_3479 0.50 -3.3
3,648,822 - Psest_3479 0.50 -2.3
3,648,822 - Psest_3479 0.50 -3.2
3,649,053 + Psest_3479 0.69 -2.8
3,649,054 - Psest_3479 0.69 -4.9
3,649,817 + Psest_3480 0.70 -2.1
3,649,817 + Psest_3480 0.70 -2.5
3,649,896 - Psest_3480 0.85 -3.1
3,649,896 - Psest_3480 0.85 -2.3
3,650,053 + -2.5
3,650,053 + -1.9
3,650,053 + -3.1
3,650,053 + -2.3
3,650,054 - +0.4
3,650,054 - +0.1
3,650,054 - +0.8
3,650,054 - +0.4
3,650,054 - +0.1
3,650,054 - +0.5
3,650,054 - +0.2
3,650,054 - -1.5
3,650,054 - +0.5
3,650,179 + -0.2
3,650,515 + Psest_3481 0.29 -1.8
3,650,515 + Psest_3481 0.29 -0.5
3,650,516 - Psest_3481 0.30 -0.2
3,650,583 + Psest_3481 0.36 -1.0
3,650,584 - Psest_3481 0.36 -0.1
3,650,584 - Psest_3481 0.36 -0.6
3,650,584 - Psest_3481 0.36 +0.0
3,650,584 - Psest_3481 0.36 +1.1
3,650,584 - Psest_3481 0.36 -0.2
3,650,584 - Psest_3481 0.36 -0.1
3,650,584 - Psest_3481 0.36 +0.2
3,650,584 - Psest_3481 0.36 +0.0
3,650,584 - Psest_3481 0.36 -0.4
3,650,584 - Psest_3481 0.36 -1.7

Or see this region's nucleotide sequence