Experiment: Anaerobic, no Mo, no W, sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0561 and Psest_0562 are separated by 204 nucleotides Psest_0562 and Psest_0563 are separated by 105 nucleotides Psest_0563 and Psest_0564 are separated by 166 nucleotides
Psest_0561: Psest_0561 - Urease accessory protein UreH, at 614,211 to 615,044
_0561
Psest_0562: Psest_0562 - magnesium-translocating P-type ATPase, at 615,249 to 618,797
_0562
Psest_0563: Psest_0563 - urea ABC transporter, ATP-binding protein UrtE, at 618,903 to 619,601
_0563
Psest_0564: Psest_0564 - urea ABC transporter, ATP-binding protein UrtD, at 619,768 to 620,619
_0564
Position (kb) 615
616
617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 614.277 kb on + strand at 614.278 kb on - strand at 614.278 kb on - strand at 614.278 kb on - strand at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.617 kb on + strand, within Psest_0561 at 614.617 kb on + strand, within Psest_0561 at 614.618 kb on - strand, within Psest_0561 at 614.618 kb on - strand, within Psest_0561 at 614.680 kb on + strand, within Psest_0561 at 614.681 kb on - strand, within Psest_0561 at 614.681 kb on - strand, within Psest_0561 at 614.750 kb on - strand, within Psest_0561 at 614.834 kb on + strand, within Psest_0561 at 614.912 kb on - strand, within Psest_0561 at 615.061 kb on + strand at 615.083 kb on + strand at 615.144 kb on - strand at 615.144 kb on - strand at 615.144 kb on - strand at 615.190 kb on + strand at 615.214 kb on + strand at 615.214 kb on + strand at 615.316 kb on + strand at 615.316 kb on + strand at 615.316 kb on + strand at 615.317 kb on - strand at 615.317 kb on - strand at 615.397 kb on + strand at 615.398 kb on - strand at 615.470 kb on - strand at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.869 kb on + strand, within Psest_0562 at 616.503 kb on + strand, within Psest_0562 at 616.503 kb on + strand, within Psest_0562 at 616.504 kb on - strand, within Psest_0562 at 616.551 kb on - strand, within Psest_0562 at 616.551 kb on - strand, within Psest_0562 at 616.660 kb on + strand, within Psest_0562 at 617.056 kb on - strand, within Psest_0562 at 617.056 kb on - strand, within Psest_0562 at 617.385 kb on + strand, within Psest_0562 at 617.569 kb on - strand, within Psest_0562 at 618.364 kb on + strand, within Psest_0562 at 618.365 kb on - strand, within Psest_0562 at 618.365 kb on - strand, within Psest_0562 at 618.376 kb on + strand, within Psest_0562 at 618.377 kb on - strand, within Psest_0562 at 618.567 kb on + strand at 618.575 kb on - strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.787 kb on - strand at 618.904 kb on + strand at 618.904 kb on + strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.925 kb on - strand at 618.991 kb on + strand, within Psest_0563 at 619.021 kb on + strand, within Psest_0563 at 619.021 kb on + strand, within Psest_0563 at 619.022 kb on - strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.253 kb on - strand, within Psest_0563 at 619.364 kb on - strand, within Psest_0563 at 619.364 kb on - strand, within Psest_0563 at 619.573 kb on + strand at 619.573 kb on + strand at 619.574 kb on - strand at 619.639 kb on + strand at 619.639 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.644 kb on - strand at 619.654 kb on + strand at 619.655 kb on - strand at 619.693 kb on + strand at 619.693 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, no Mo, no W, sample1 remove 614,277 + +0.6 614,278 - +0.7 614,278 - +0.2 614,278 - +0.2 614,410 + Psest_0561 0.24 +2.2 614,410 + Psest_0561 0.24 -1.6 614,410 + Psest_0561 0.24 +0.8 614,410 + Psest_0561 0.24 +0.5 614,410 + Psest_0561 0.24 -0.7 614,410 + Psest_0561 0.24 -0.4 614,410 + Psest_0561 0.24 -0.9 614,410 + Psest_0561 0.24 +0.5 614,410 + Psest_0561 0.24 +0.5 614,410 + Psest_0561 0.24 +0.3 614,410 + Psest_0561 0.24 -0.2 614,411 - Psest_0561 0.24 -0.1 614,411 - Psest_0561 0.24 +0.4 614,411 - Psest_0561 0.24 +0.6 614,411 - Psest_0561 0.24 -0.1 614,411 - Psest_0561 0.24 +0.1 614,411 - Psest_0561 0.24 +0.8 614,411 - Psest_0561 0.24 -0.1 614,411 - Psest_0561 0.24 +0.6 614,411 - Psest_0561 0.24 -0.1 614,411 - Psest_0561 0.24 +0.5 614,411 - Psest_0561 0.24 +0.1 614,411 - Psest_0561 0.24 -0.1 614,411 - Psest_0561 0.24 +0.2 614,617 + Psest_0561 0.49 -0.3 614,617 + Psest_0561 0.49 +0.1 614,618 - Psest_0561 0.49 -0.5 614,618 - Psest_0561 0.49 -0.8 614,680 + Psest_0561 0.56 +0.4 614,681 - Psest_0561 0.56 -0.2 614,681 - Psest_0561 0.56 +0.8 614,750 - Psest_0561 0.65 -0.1 614,834 + Psest_0561 0.75 +0.1 614,912 - Psest_0561 0.84 +0.2 615,061 + -0.0 615,083 + -0.2 615,144 - -1.2 615,144 - +0.2 615,144 - +0.8 615,190 + +1.0 615,214 + +0.7 615,214 + -0.1 615,316 + +0.6 615,316 + +0.1 615,316 + -0.7 615,317 - -0.7 615,317 - +1.2 615,397 + +0.4 615,398 - -0.1 615,470 - +0.1 615,847 + Psest_0562 0.17 +0.2 615,847 + Psest_0562 0.17 -0.2 615,847 + Psest_0562 0.17 -0.5 615,847 + Psest_0562 0.17 +1.0 615,847 + Psest_0562 0.17 +0.1 615,847 + Psest_0562 0.17 +0.7 615,847 + Psest_0562 0.17 +0.0 615,847 + Psest_0562 0.17 +1.2 615,847 + Psest_0562 0.17 -0.8 615,847 + Psest_0562 0.17 -0.8 615,847 + Psest_0562 0.17 +1.3 615,847 + Psest_0562 0.17 +0.0 615,847 + Psest_0562 0.17 -0.5 615,848 - Psest_0562 0.17 -0.3 615,848 - Psest_0562 0.17 -0.2 615,848 - Psest_0562 0.17 +0.9 615,848 - Psest_0562 0.17 +0.0 615,848 - Psest_0562 0.17 +0.0 615,848 - Psest_0562 0.17 +0.4 615,848 - Psest_0562 0.17 +0.0 615,848 - Psest_0562 0.17 +0.3 615,848 - Psest_0562 0.17 -0.9 615,848 - Psest_0562 0.17 +0.9 615,869 + Psest_0562 0.17 +0.4 616,503 + Psest_0562 0.35 +0.1 616,503 + Psest_0562 0.35 -0.1 616,504 - Psest_0562 0.35 +0.1 616,551 - Psest_0562 0.37 +0.2 616,551 - Psest_0562 0.37 -0.6 616,660 + Psest_0562 0.40 +0.5 617,056 - Psest_0562 0.51 +0.7 617,056 - Psest_0562 0.51 +0.9 617,385 + Psest_0562 0.60 +0.2 617,569 - Psest_0562 0.65 +0.1 618,364 + Psest_0562 0.88 +0.0 618,365 - Psest_0562 0.88 -0.3 618,365 - Psest_0562 0.88 -0.5 618,376 + Psest_0562 0.88 -0.6 618,377 - Psest_0562 0.88 -0.4 618,567 + +0.2 618,575 - +0.4 618,595 + -0.0 618,595 + -0.8 618,595 + +0.3 618,595 + -0.2 618,595 + -0.2 618,595 + +0.1 618,595 + -1.8 618,595 + +0.2 618,595 + -0.4 618,595 + +1.0 618,595 + -0.9 618,596 - -0.7 618,596 - +0.3 618,596 - +0.3 618,596 - +0.6 618,596 - +0.1 618,596 - -0.1 618,596 - +0.3 618,596 - -0.5 618,596 - +0.3 618,596 - +0.5 618,596 - +0.0 618,786 + +0.5 618,786 + -0.0 618,786 + +0.2 618,786 + +0.4 618,787 - -0.4 618,904 + -0.2 618,904 + -0.7 618,905 - -0.4 618,905 - +0.3 618,905 - +0.7 618,905 - -0.4 618,905 - -1.0 618,924 + +1.2 618,924 + -0.1 618,924 + +0.3 618,924 + -0.5 618,924 + -0.1 618,924 + -0.9 618,924 + +0.2 618,924 + +0.6 618,925 - +0.4 618,991 + Psest_0563 0.13 -0.2 619,021 + Psest_0563 0.17 +0.3 619,021 + Psest_0563 0.17 -0.4 619,022 - Psest_0563 0.17 +0.4 619,252 + Psest_0563 0.50 +3.1 619,252 + Psest_0563 0.50 -0.3 619,252 + Psest_0563 0.50 -0.2 619,252 + Psest_0563 0.50 +0.8 619,253 - Psest_0563 0.50 +0.2 619,364 - Psest_0563 0.66 -0.9 619,364 - Psest_0563 0.66 -0.5 619,573 + -0.1 619,573 + +0.5 619,574 - +0.2 619,639 + +0.5 619,639 + +0.1 619,643 + -0.3 619,643 + -0.1 619,643 + -0.0 619,643 + +0.4 619,644 - +0.6 619,654 + -0.2 619,655 - -0.4 619,693 + -0.5 619,693 + +0.1 619,781 + -0.1 619,781 + +0.5 619,781 + +0.9 619,781 + -0.3 619,781 + +0.1 619,782 - -0.2 619,782 - +0.5 619,782 - +1.0 619,782 - -0.1 619,782 - +0.0 619,782 - +1.5
Or see this region's nucleotide sequence