Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0801

Experiment: Anaerobic, with iron sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0800 and Psest_0801 are separated by 336 nucleotidesPsest_0801 and Psest_0802 are separated by 10 nucleotidesPsest_0802 and Psest_0803 are separated by 70 nucleotides Psest_0800: Psest_0800 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 874,734 to 875,477 _0800 Psest_0801: Psest_0801 - CBS-domain-containing membrane protein, at 875,814 to 876,950 _0801 Psest_0802: Psest_0802 - Transcriptional regulator, at 876,961 to 877,821 _0802 Psest_0803: Psest_0803 - prepilin-type N-terminal cleavage/methylation domain, at 877,892 to 878,419 _0803 Position (kb) 875 876 877Strain fitness (log2 ratio) -2 -1 0 1at 875.078 kb on + strand, within Psest_0800at 875.078 kb on + strand, within Psest_0800at 875.079 kb on - strand, within Psest_0800at 875.175 kb on + strand, within Psest_0800at 875.175 kb on + strand, within Psest_0800at 875.175 kb on + strand, within Psest_0800at 875.175 kb on + strand, within Psest_0800at 875.175 kb on + strand, within Psest_0800at 875.175 kb on + strand, within Psest_0800at 875.175 kb on + strand, within Psest_0800at 875.175 kb on + strand, within Psest_0800at 875.176 kb on - strand, within Psest_0800at 875.176 kb on - strand, within Psest_0800at 875.176 kb on - strand, within Psest_0800at 875.176 kb on - strand, within Psest_0800at 875.176 kb on - strand, within Psest_0800at 875.176 kb on - strand, within Psest_0800at 875.178 kb on - strand, within Psest_0800at 875.249 kb on + strand, within Psest_0800at 875.465 kb on + strandat 875.465 kb on + strandat 875.465 kb on + strandat 875.465 kb on + strandat 875.465 kb on + strandat 875.465 kb on + strandat 875.466 kb on - strandat 875.466 kb on - strandat 875.466 kb on - strandat 875.466 kb on - strandat 875.466 kb on - strandat 875.466 kb on - strandat 875.466 kb on - strandat 875.598 kb on + strandat 875.599 kb on - strandat 876.303 kb on + strand, within Psest_0801at 876.303 kb on + strand, within Psest_0801at 876.303 kb on + strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.444 kb on + strand, within Psest_0801at 876.445 kb on - strand, within Psest_0801at 876.445 kb on - strand, within Psest_0801at 876.445 kb on - strand, within Psest_0801at 876.558 kb on + strand, within Psest_0801at 876.558 kb on + strand, within Psest_0801at 876.559 kb on - strand, within Psest_0801at 876.819 kb on + strand, within Psest_0801at 876.819 kb on + strand, within Psest_0801at 876.819 kb on + strand, within Psest_0801at 876.820 kb on - strand, within Psest_0801at 876.820 kb on - strand, within Psest_0801at 876.972 kb on - strandat 877.073 kb on + strand, within Psest_0802at 877.074 kb on - strand, within Psest_0802at 877.074 kb on - strand, within Psest_0802at 877.082 kb on + strand, within Psest_0802at 877.160 kb on + strand, within Psest_0802at 877.218 kb on + strand, within Psest_0802at 877.218 kb on + strand, within Psest_0802at 877.218 kb on + strand, within Psest_0802at 877.218 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.296 kb on - strand, within Psest_0802at 877.296 kb on - strand, within Psest_0802at 877.296 kb on - strand, within Psest_0802at 877.374 kb on - strand, within Psest_0802at 877.495 kb on + strand, within Psest_0802at 877.622 kb on + strand, within Psest_0802at 877.622 kb on + strand, within Psest_0802at 877.623 kb on - strand, within Psest_0802at 877.743 kb on + strandat 877.743 kb on + strandat 877.855 kb on + strandat 877.855 kb on + strandat 877.855 kb on + strandat 877.855 kb on + strandat 877.856 kb on - strandat 877.856 kb on - strandat 877.856 kb on - strandat 877.856 kb on - strandat 877.883 kb on + strandat 877.884 kb on - strandat 877.887 kb on + strandat 877.887 kb on + strandat 877.887 kb on + strandat 877.887 kb on + strandat 877.887 kb on + strandat 877.888 kb on - strandat 877.888 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, with iron sample1
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875,078 + Psest_0800 0.46 +1.4
875,078 + Psest_0800 0.46 +0.7
875,079 - Psest_0800 0.46 +0.7
875,175 + Psest_0800 0.59 -0.3
875,175 + Psest_0800 0.59 -0.7
875,175 + Psest_0800 0.59 +0.6
875,175 + Psest_0800 0.59 +0.8
875,175 + Psest_0800 0.59 -0.5
875,175 + Psest_0800 0.59 -0.1
875,175 + Psest_0800 0.59 -0.4
875,175 + Psest_0800 0.59 -0.7
875,176 - Psest_0800 0.59 -0.2
875,176 - Psest_0800 0.59 +0.2
875,176 - Psest_0800 0.59 +0.2
875,176 - Psest_0800 0.59 -0.4
875,176 - Psest_0800 0.59 -2.6
875,176 - Psest_0800 0.59 -0.1
875,178 - Psest_0800 0.60 -0.4
875,249 + Psest_0800 0.69 -0.6
875,465 + +0.2
875,465 + +0.0
875,465 + +0.4
875,465 + +0.0
875,465 + +1.1
875,465 + +0.1
875,466 - +1.0
875,466 - -0.1
875,466 - -0.3
875,466 - -0.2
875,466 - -0.1
875,466 - -0.1
875,466 - +0.1
875,598 + +0.6
875,599 - -0.2
876,303 + Psest_0801 0.43 +1.3
876,303 + Psest_0801 0.43 -0.6
876,303 + Psest_0801 0.43 -0.1
876,304 - Psest_0801 0.43 -0.6
876,304 - Psest_0801 0.43 -0.3
876,304 - Psest_0801 0.43 +0.2
876,304 - Psest_0801 0.43 -0.4
876,304 - Psest_0801 0.43 -0.1
876,304 - Psest_0801 0.43 +0.2
876,444 + Psest_0801 0.55 -0.6
876,445 - Psest_0801 0.55 +0.1
876,445 - Psest_0801 0.55 +0.5
876,445 - Psest_0801 0.55 -0.0
876,558 + Psest_0801 0.65 +0.2
876,558 + Psest_0801 0.65 +0.1
876,559 - Psest_0801 0.66 +0.6
876,819 + Psest_0801 0.88 +1.0
876,819 + Psest_0801 0.88 -0.1
876,819 + Psest_0801 0.88 +0.4
876,820 - Psest_0801 0.88 +0.2
876,820 - Psest_0801 0.88 -0.1
876,972 - +0.2
877,073 + Psest_0802 0.13 +0.2
877,074 - Psest_0802 0.13 +0.4
877,074 - Psest_0802 0.13 +0.2
877,082 + Psest_0802 0.14 -0.2
877,160 + Psest_0802 0.23 +0.4
877,218 + Psest_0802 0.30 +0.2
877,218 + Psest_0802 0.30 +0.4
877,218 + Psest_0802 0.30 -0.7
877,218 + Psest_0802 0.30 -0.1
877,289 + Psest_0802 0.38 +0.7
877,289 + Psest_0802 0.38 +0.6
877,289 + Psest_0802 0.38 -0.9
877,289 + Psest_0802 0.38 -0.2
877,289 + Psest_0802 0.38 +1.4
877,289 + Psest_0802 0.38 -1.6
877,290 - Psest_0802 0.38 +0.4
877,290 - Psest_0802 0.38 +0.0
877,290 - Psest_0802 0.38 +0.4
877,290 - Psest_0802 0.38 +1.4
877,290 - Psest_0802 0.38 +0.2
877,290 - Psest_0802 0.38 -0.0
877,290 - Psest_0802 0.38 -0.5
877,290 - Psest_0802 0.38 +0.0
877,290 - Psest_0802 0.38 -0.5
877,290 - Psest_0802 0.38 +0.2
877,295 + Psest_0802 0.39 +0.1
877,295 + Psest_0802 0.39 -0.4
877,295 + Psest_0802 0.39 -0.1
877,295 + Psest_0802 0.39 +0.2
877,295 + Psest_0802 0.39 +0.2
877,295 + Psest_0802 0.39 -0.1
877,296 - Psest_0802 0.39 +0.2
877,296 - Psest_0802 0.39 -0.3
877,296 - Psest_0802 0.39 +0.1
877,374 - Psest_0802 0.48 +0.5
877,495 + Psest_0802 0.62 +0.6
877,622 + Psest_0802 0.77 -0.4
877,622 + Psest_0802 0.77 +0.3
877,623 - Psest_0802 0.77 -0.2
877,743 + +0.9
877,743 + -0.1
877,855 + +0.6
877,855 + +0.0
877,855 + +0.4
877,855 + +0.2
877,856 - -0.2
877,856 - +0.1
877,856 - +0.3
877,856 - -0.1
877,883 + +0.2
877,884 - -0.0
877,887 + +0.0
877,887 + -0.5
877,887 + +0.6
877,887 + -1.2
877,887 + -0.7
877,888 - +0.1
877,888 - -0.9

Or see this region's nucleotide sequence