Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07005

Experiment: GAM 1x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07010 and HMPREF1058_RS07005 are separated by 200 nucleotidesHMPREF1058_RS07005 and HMPREF1058_RS07000 are separated by 89 nucleotides HMPREF1058_RS07010: HMPREF1058_RS07010 - endolytic transglycosylase MltG, at 335,557 to 336,591 _RS07010 HMPREF1058_RS07005: HMPREF1058_RS07005 - alpha-N-arabinofuranosidase, at 336,792 to 338,315 _RS07005 HMPREF1058_RS07000: HMPREF1058_RS07000 - DNA/RNA non-specific endonuclease, at 338,405 to 339,262 _RS07000 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 335.875 kb on - strand, within HMPREF1058_RS07010at 335.977 kb on - strand, within HMPREF1058_RS07010at 336.069 kb on + strand, within HMPREF1058_RS07010at 336.093 kb on + strand, within HMPREF1058_RS07010at 336.126 kb on + strand, within HMPREF1058_RS07010at 336.126 kb on + strandat 336.235 kb on + strand, within HMPREF1058_RS07010at 336.340 kb on + strand, within HMPREF1058_RS07010at 336.341 kb on - strand, within HMPREF1058_RS07010at 336.390 kb on + strand, within HMPREF1058_RS07010at 336.397 kb on - strand, within HMPREF1058_RS07010at 336.428 kb on - strand, within HMPREF1058_RS07010at 336.454 kb on + strand, within HMPREF1058_RS07010at 336.456 kb on + strand, within HMPREF1058_RS07010at 336.458 kb on + strand, within HMPREF1058_RS07010at 336.459 kb on - strand, within HMPREF1058_RS07010at 336.459 kb on - strand, within HMPREF1058_RS07010at 336.462 kb on + strand, within HMPREF1058_RS07010at 336.464 kb on + strand, within HMPREF1058_RS07010at 336.504 kb on - strandat 336.509 kb on + strandat 336.509 kb on + strandat 336.510 kb on - strandat 336.510 kb on - strandat 336.510 kb on - strandat 336.511 kb on + strandat 336.512 kb on - strandat 336.514 kb on - strandat 336.514 kb on - strandat 336.550 kb on - strandat 336.559 kb on - strandat 336.559 kb on - strandat 336.565 kb on + strandat 336.615 kb on - strandat 336.623 kb on - strandat 336.625 kb on - strandat 336.625 kb on - strandat 336.704 kb on + strandat 336.704 kb on + strandat 336.705 kb on - strandat 336.746 kb on + strandat 336.748 kb on + strandat 336.792 kb on - strandat 336.853 kb on + strandat 336.854 kb on - strandat 336.926 kb on + strandat 336.926 kb on + strandat 336.927 kb on - strandat 337.063 kb on - strand, within HMPREF1058_RS07005at 337.146 kb on - strand, within HMPREF1058_RS07005at 337.186 kb on + strand, within HMPREF1058_RS07005at 337.201 kb on - strand, within HMPREF1058_RS07005at 337.201 kb on - strand, within HMPREF1058_RS07005at 337.216 kb on + strand, within HMPREF1058_RS07005at 337.258 kb on - strand, within HMPREF1058_RS07005at 337.345 kb on + strand, within HMPREF1058_RS07005at 337.349 kb on + strand, within HMPREF1058_RS07005at 337.393 kb on - strand, within HMPREF1058_RS07005at 337.434 kb on + strand, within HMPREF1058_RS07005at 337.434 kb on + strand, within HMPREF1058_RS07005at 337.434 kb on + strand, within HMPREF1058_RS07005at 337.435 kb on - strand, within HMPREF1058_RS07005at 337.435 kb on - strand, within HMPREF1058_RS07005at 337.479 kb on + strand, within HMPREF1058_RS07005at 337.551 kb on + strand, within HMPREF1058_RS07005at 337.664 kb on + strand, within HMPREF1058_RS07005at 337.834 kb on - strand, within HMPREF1058_RS07005at 337.834 kb on - strand, within HMPREF1058_RS07005at 337.933 kb on - strand, within HMPREF1058_RS07005at 337.951 kb on - strand, within HMPREF1058_RS07005at 337.952 kb on + strand, within HMPREF1058_RS07005at 337.953 kb on - strand, within HMPREF1058_RS07005at 337.971 kb on - strand, within HMPREF1058_RS07005at 337.975 kb on - strand, within HMPREF1058_RS07005at 338.011 kb on + strand, within HMPREF1058_RS07005at 338.024 kb on + strand, within HMPREF1058_RS07005at 338.024 kb on + strand, within HMPREF1058_RS07005at 338.039 kb on - strand, within HMPREF1058_RS07005at 338.119 kb on + strand, within HMPREF1058_RS07005at 338.186 kb on - strandat 338.193 kb on + strandat 338.194 kb on - strandat 338.199 kb on - strandat 338.313 kb on + strandat 338.322 kb on + strandat 338.344 kb on + strandat 338.344 kb on + strandat 338.345 kb on - strandat 338.345 kb on - strandat 338.345 kb on - strandat 338.348 kb on + strandat 338.349 kb on - strandat 338.349 kb on - strandat 338.349 kb on - strandat 338.362 kb on + strandat 338.362 kb on + strandat 338.362 kb on + strandat 338.362 kb on + strandat 338.363 kb on - strandat 338.363 kb on - strandat 338.363 kb on - strandat 338.366 kb on + strandat 338.366 kb on + strandat 338.367 kb on - strandat 338.370 kb on + strandat 338.370 kb on + strandat 338.370 kb on + strandat 338.370 kb on + strandat 338.370 kb on + strandat 338.371 kb on - strandat 338.371 kb on - strandat 338.371 kb on - strandat 338.371 kb on - strandat 338.371 kb on - strandat 338.374 kb on + strandat 338.516 kb on - strand, within HMPREF1058_RS07000at 338.533 kb on + strand, within HMPREF1058_RS07000at 338.558 kb on - strand, within HMPREF1058_RS07000at 338.659 kb on + strand, within HMPREF1058_RS07000at 338.667 kb on + strand, within HMPREF1058_RS07000at 338.667 kb on + strand, within HMPREF1058_RS07000at 338.668 kb on - strand, within HMPREF1058_RS07000at 338.668 kb on - strand, within HMPREF1058_RS07000at 338.668 kb on - strand, within HMPREF1058_RS07000at 338.669 kb on + strand, within HMPREF1058_RS07000at 338.669 kb on + strand, within HMPREF1058_RS07000at 338.669 kb on + strand, within HMPREF1058_RS07000at 338.670 kb on - strand, within HMPREF1058_RS07000at 338.670 kb on - strand, within HMPREF1058_RS07000at 338.670 kb on - strand, within HMPREF1058_RS07000at 338.688 kb on + strand, within HMPREF1058_RS07000at 338.689 kb on - strand, within HMPREF1058_RS07000at 338.789 kb on - strand, within HMPREF1058_RS07000at 338.790 kb on + strand, within HMPREF1058_RS07000at 338.791 kb on - strand, within HMPREF1058_RS07000at 338.873 kb on - strand, within HMPREF1058_RS07000at 338.885 kb on - strand, within HMPREF1058_RS07000at 338.887 kb on - strand, within HMPREF1058_RS07000at 338.887 kb on - strand, within HMPREF1058_RS07000at 338.904 kb on - strand, within HMPREF1058_RS07000at 338.904 kb on - strand, within HMPREF1058_RS07000at 339.008 kb on - strand, within HMPREF1058_RS07000at 339.009 kb on + strand, within HMPREF1058_RS07000at 339.019 kb on + strand, within HMPREF1058_RS07000at 339.020 kb on - strand, within HMPREF1058_RS07000at 339.053 kb on - strandat 339.063 kb on - strand, within HMPREF1058_RS07000at 339.181 kb on + strandat 339.182 kb on - strandat 339.184 kb on - strandat 339.203 kb on + strandat 339.204 kb on - strandat 339.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1x (C) complex media
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335,875 - HMPREF1058_RS07010 0.31 +0.2
335,977 - HMPREF1058_RS07010 0.41 +0.4
336,069 + HMPREF1058_RS07010 0.49 -0.4
336,093 + HMPREF1058_RS07010 0.52 -0.4
336,126 + HMPREF1058_RS07010 0.55 +0.3
336,126 + -1.7
336,235 + HMPREF1058_RS07010 0.66 -0.5
336,340 + HMPREF1058_RS07010 0.76 +0.2
336,341 - HMPREF1058_RS07010 0.76 -0.4
336,390 + HMPREF1058_RS07010 0.80 +0.2
336,397 - HMPREF1058_RS07010 0.81 +1.9
336,428 - HMPREF1058_RS07010 0.84 -0.9
336,454 + HMPREF1058_RS07010 0.87 -0.9
336,456 + HMPREF1058_RS07010 0.87 -0.7
336,458 + HMPREF1058_RS07010 0.87 -0.3
336,459 - HMPREF1058_RS07010 0.87 +0.5
336,459 - HMPREF1058_RS07010 0.87 +0.5
336,462 + HMPREF1058_RS07010 0.87 +0.9
336,464 + HMPREF1058_RS07010 0.88 +1.0
336,504 - +0.1
336,509 + -0.7
336,509 + -0.6
336,510 - +0.5
336,510 - +0.3
336,510 - +0.6
336,511 + -0.3
336,512 - -0.5
336,514 - +0.3
336,514 - +2.8
336,550 - -0.0
336,559 - +0.2
336,559 - +0.4
336,565 + -0.5
336,615 - -0.1
336,623 - -0.9
336,625 - +0.6
336,625 - +0.0
336,704 + +0.2
336,704 + -0.7
336,705 - +0.5
336,746 + +0.4
336,748 + -0.7
336,792 - -0.9
336,853 + +0.2
336,854 - +0.2
336,926 + -0.6
336,926 + +0.1
336,927 - -0.3
337,063 - HMPREF1058_RS07005 0.18 +0.1
337,146 - HMPREF1058_RS07005 0.23 +0.2
337,186 + HMPREF1058_RS07005 0.26 +0.1
337,201 - HMPREF1058_RS07005 0.27 +5.1
337,201 - HMPREF1058_RS07005 0.27 -0.1
337,216 + HMPREF1058_RS07005 0.28 -1.7
337,258 - HMPREF1058_RS07005 0.31 +0.0
337,345 + HMPREF1058_RS07005 0.36 -1.3
337,349 + HMPREF1058_RS07005 0.37 +0.8
337,393 - HMPREF1058_RS07005 0.39 -0.0
337,434 + HMPREF1058_RS07005 0.42 -0.3
337,434 + HMPREF1058_RS07005 0.42 +0.1
337,434 + HMPREF1058_RS07005 0.42 +0.1
337,435 - HMPREF1058_RS07005 0.42 +0.3
337,435 - HMPREF1058_RS07005 0.42 -0.7
337,479 + HMPREF1058_RS07005 0.45 -1.9
337,551 + HMPREF1058_RS07005 0.50 -0.3
337,664 + HMPREF1058_RS07005 0.57 +0.5
337,834 - HMPREF1058_RS07005 0.68 +0.2
337,834 - HMPREF1058_RS07005 0.68 +0.4
337,933 - HMPREF1058_RS07005 0.75 -0.9
337,951 - HMPREF1058_RS07005 0.76 -0.9
337,952 + HMPREF1058_RS07005 0.76 -0.2
337,953 - HMPREF1058_RS07005 0.76 +0.3
337,971 - HMPREF1058_RS07005 0.77 +0.1
337,975 - HMPREF1058_RS07005 0.78 +0.8
338,011 + HMPREF1058_RS07005 0.80 -0.8
338,024 + HMPREF1058_RS07005 0.81 -0.3
338,024 + HMPREF1058_RS07005 0.81 +0.4
338,039 - HMPREF1058_RS07005 0.82 +1.9
338,119 + HMPREF1058_RS07005 0.87 +0.5
338,186 - -0.5
338,193 + +0.3
338,194 - -0.1
338,199 - +0.5
338,313 + +0.1
338,322 + -0.3
338,344 + +0.0
338,344 + -0.4
338,345 - +0.2
338,345 - -0.7
338,345 - +0.4
338,348 + -0.7
338,349 - +0.1
338,349 - +0.0
338,349 - +1.0
338,362 + -0.6
338,362 + -0.1
338,362 + -0.2
338,362 + +0.7
338,363 - -0.3
338,363 - +1.0
338,363 - +0.6
338,366 + +0.7
338,366 + -0.0
338,367 - +0.3
338,370 + -0.2
338,370 + -0.3
338,370 + -1.0
338,370 + +0.3
338,370 + -0.0
338,371 - -0.2
338,371 - -0.4
338,371 - +0.3
338,371 - +0.4
338,371 - -0.6
338,374 + -0.1
338,516 - HMPREF1058_RS07000 0.13 +0.0
338,533 + HMPREF1058_RS07000 0.15 -0.4
338,558 - HMPREF1058_RS07000 0.18 -0.4
338,659 + HMPREF1058_RS07000 0.30 -0.7
338,667 + HMPREF1058_RS07000 0.31 +0.2
338,667 + HMPREF1058_RS07000 0.31 -0.3
338,668 - HMPREF1058_RS07000 0.31 +0.6
338,668 - HMPREF1058_RS07000 0.31 -0.7
338,668 - HMPREF1058_RS07000 0.31 +0.3
338,669 + HMPREF1058_RS07000 0.31 +0.1
338,669 + HMPREF1058_RS07000 0.31 +0.9
338,669 + HMPREF1058_RS07000 0.31 -0.4
338,670 - HMPREF1058_RS07000 0.31 +0.6
338,670 - HMPREF1058_RS07000 0.31 +0.1
338,670 - HMPREF1058_RS07000 0.31 +0.4
338,688 + HMPREF1058_RS07000 0.33 -0.1
338,689 - HMPREF1058_RS07000 0.33 -0.8
338,789 - HMPREF1058_RS07000 0.45 +0.4
338,790 + HMPREF1058_RS07000 0.45 +0.1
338,791 - HMPREF1058_RS07000 0.45 -0.0
338,873 - HMPREF1058_RS07000 0.55 +0.2
338,885 - HMPREF1058_RS07000 0.56 +0.8
338,887 - HMPREF1058_RS07000 0.56 +0.5
338,887 - HMPREF1058_RS07000 0.56 +2.2
338,904 - HMPREF1058_RS07000 0.58 +0.6
338,904 - HMPREF1058_RS07000 0.58 +0.1
339,008 - HMPREF1058_RS07000 0.70 +0.4
339,009 + HMPREF1058_RS07000 0.70 +0.2
339,019 + HMPREF1058_RS07000 0.72 +0.2
339,020 - HMPREF1058_RS07000 0.72 +0.1
339,053 - -2.0
339,063 - HMPREF1058_RS07000 0.77 -0.1
339,181 + -1.3
339,182 - +0.1
339,184 - -1.0
339,203 + +1.1
339,204 - -0.6
339,295 + -0.3

Or see this region's nucleotide sequence