Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09700 and HMPREF1058_RS21625 are separated by 286 nucleotides HMPREF1058_RS21625 and HMPREF1058_RS09695 are separated by 1 nucleotides
HMPREF1058_RS09700: HMPREF1058_RS09700 - methionine--tRNA ligase, at 815,883 to 817,925
_RS09700
HMPREF1058_RS21625: HMPREF1058_RS21625 - hypothetical protein, at 818,212 to 818,379
_RS21625
HMPREF1058_RS09695: HMPREF1058_RS09695 - YifB family Mg chelatase-like AAA ATPase, at 818,381 to 819,919
_RS09695
Position (kb) 818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 818.040 kb on + strand at 818.051 kb on - strand at 818.051 kb on - strand at 818.088 kb on - strand at 818.102 kb on + strand at 818.127 kb on - strand at 818.217 kb on + strand at 818.225 kb on - strand at 818.226 kb on + strand at 818.315 kb on - strand, within HMPREF1058_RS21625 at 818.347 kb on + strand, within HMPREF1058_RS21625 at 818.378 kb on - strand at 818.378 kb on - strand at 818.416 kb on - strand at 818.447 kb on - strand at 818.493 kb on - strand at 818.493 kb on - strand at 818.497 kb on + strand at 818.619 kb on + strand, within HMPREF1058_RS09695 at 818.744 kb on + strand, within HMPREF1058_RS09695 at 818.744 kb on + strand, within HMPREF1058_RS09695 at 818.848 kb on + strand, within HMPREF1058_RS09695 at 818.850 kb on + strand, within HMPREF1058_RS09695 at 818.851 kb on - strand, within HMPREF1058_RS09695 at 818.917 kb on - strand, within HMPREF1058_RS09695 at 818.938 kb on + strand, within HMPREF1058_RS09695 at 818.938 kb on + strand at 818.938 kb on + strand, within HMPREF1058_RS09695 at 818.939 kb on - strand, within HMPREF1058_RS09695 at 818.939 kb on - strand, within HMPREF1058_RS09695 at 818.939 kb on - strand, within HMPREF1058_RS09695 at 818.939 kb on - strand, within HMPREF1058_RS09695 at 818.966 kb on + strand, within HMPREF1058_RS09695 at 819.077 kb on + strand, within HMPREF1058_RS09695 at 819.077 kb on + strand, within HMPREF1058_RS09695 at 819.078 kb on - strand, within HMPREF1058_RS09695 at 819.091 kb on + strand, within HMPREF1058_RS09695 at 819.265 kb on + strand, within HMPREF1058_RS09695 at 819.265 kb on + strand, within HMPREF1058_RS09695 at 819.356 kb on - strand, within HMPREF1058_RS09695
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 818,040 + -0.0 818,051 - -1.8 818,051 - -1.8 818,088 - -2.9 818,102 + -0.5 818,127 - -1.8 818,217 + -0.3 818,225 - -0.2 818,226 + +0.3 818,315 - HMPREF1058_RS21625 0.61 -1.2 818,347 + HMPREF1058_RS21625 0.80 -0.8 818,378 - -0.6 818,378 - -1.3 818,416 - +0.4 818,447 - -0.2 818,493 - -0.5 818,493 - +0.0 818,497 + -0.9 818,619 + HMPREF1058_RS09695 0.15 +0.4 818,744 + HMPREF1058_RS09695 0.24 -1.7 818,744 + HMPREF1058_RS09695 0.24 +0.2 818,848 + HMPREF1058_RS09695 0.30 +0.1 818,850 + HMPREF1058_RS09695 0.30 +0.0 818,851 - HMPREF1058_RS09695 0.31 +0.2 818,917 - HMPREF1058_RS09695 0.35 -0.2 818,938 + HMPREF1058_RS09695 0.36 -0.1 818,938 + +1.4 818,938 + HMPREF1058_RS09695 0.36 +0.4 818,939 - HMPREF1058_RS09695 0.36 -2.5 818,939 - HMPREF1058_RS09695 0.36 -0.2 818,939 - HMPREF1058_RS09695 0.36 -1.3 818,939 - HMPREF1058_RS09695 0.36 -1.4 818,966 + HMPREF1058_RS09695 0.38 -0.2 819,077 + HMPREF1058_RS09695 0.45 -0.2 819,077 + HMPREF1058_RS09695 0.45 +0.8 819,078 - HMPREF1058_RS09695 0.45 +0.5 819,091 + HMPREF1058_RS09695 0.46 -0.4 819,265 + HMPREF1058_RS09695 0.57 -0.7 819,265 + HMPREF1058_RS09695 0.57 +0.5 819,356 - HMPREF1058_RS09695 0.63 -0.5
Or see this region's nucleotide sequence