Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21590

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,107,334	+				-0.9
1,107,334	+				+1.0
1,107,334	+				-1.9
1,107,335	-				-1.0
1,107,428	-				-3.7
1,107,442	-				-1.1
1,107,445	-				+0.7
1,107,445	-				-0.6
1,107,516	+				-0.2
1,107,517	-				-1.5
1,107,684	+		HMPREF1058_RS14770	0.28	-0.3
1,107,780	+		HMPREF1058_RS14770	0.41	-0.5
1,107,780	+		HMPREF1058_RS14770	0.41	-2.4
1,107,781	-		HMPREF1058_RS14770	0.41	+2.6
1,107,781	-		HMPREF1058_RS14770	0.41	-0.0
1,107,894	+		HMPREF1058_RS14770	0.56	-4.7
1,107,894	+		HMPREF1058_RS14770	0.56	-2.1
1,107,896	+		HMPREF1058_RS14770	0.56	-2.0
1,107,897	-		HMPREF1058_RS14770	0.56	-2.2
1,107,928	+		HMPREF1058_RS14770	0.60	-3.8
1,107,929	-		HMPREF1058_RS14770	0.60	-1.4
1,107,959	+		HMPREF1058_RS14770	0.64	-0.8
1,108,034	-		HMPREF1058_RS14770	0.74	-1.5
1,108,131	+		HMPREF1058_RS14770	0.86	-2.3
1,108,144	+		HMPREF1058_RS14770	0.88	-1.3
1,108,153	-		HMPREF1058_RS14770	0.89	-1.5
1,108,235	+				+0.5
1,108,235	+				+2.3
1,108,253	+				+0.1
1,108,254	-				+0.2
1,108,254	-				-0.7
1,108,254	-				-1.6
1,108,332	-		HMPREF1058_RS21590	0.18	-1.2
1,108,332	-		HMPREF1058_RS21590	0.18	-2.3
1,108,462	+				-1.5
1,108,520	-				-0.5
1,108,747	-		HMPREF1058_RS14765	0.28	+1.7
1,108,912	+		HMPREF1058_RS14765	0.45	-1.7
1,108,951	+		HMPREF1058_RS14765	0.49	-0.7
1,108,951	+		HMPREF1058_RS14765	0.49	-0.4
1,108,953	+		HMPREF1058_RS14765	0.49	-2.5
1,109,088	+		HMPREF1058_RS14765	0.63	-0.7
1,109,215	+		HMPREF1058_RS14765	0.76	-0.6
1,109,243	-		HMPREF1058_RS14765	0.79	-0.3
1,109,275	+		HMPREF1058_RS14765	0.82	-1.6
1,109,275	+		HMPREF1058_RS14765	0.82	-0.4
1,109,275	+		HMPREF1058_RS14765	0.82	-1.7
1,109,276	-		HMPREF1058_RS14765	0.82	+1.0
1,109,276	-		HMPREF1058_RS14765	0.82	-1.1
1,109,278	+		HMPREF1058_RS14765	0.83	+0.1
1,109,448	+				-2.0
1,109,449	-				-0.0
1,109,461	-				+0.2