Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05700 and HMPREF1058_RS0119830 are separated by 35 nucleotides HMPREF1058_RS0119830 and HMPREF1058_RS21490 are separated by 172 nucleotides HMPREF1058_RS21490 and HMPREF1058_RS0119835 are separated by 449 nucleotides
HMPREF1058_RS05700: HMPREF1058_RS05700 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 100,186 to 101,091
_RS05700
HMPREF1058_RS0119830: HMPREF1058_RS0119830 - helix-turn-helix transcriptional regulator, at 101,127 to 101,366
_RS0119830
HMPREF1058_RS21490: HMPREF1058_RS21490 - hypothetical protein, at 101,539 to 101,682
_RS21490
HMPREF1058_RS0119835: HMPREF1058_RS0119835 - type II toxin-antitoxin system HipA family toxin, at 102,132 to 103,395
_RS0119835
Position (kb) 101
102 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 100.543 kb on + strand, within HMPREF1058_RS05700 at 100.572 kb on + strand, within HMPREF1058_RS05700 at 100.572 kb on + strand, within HMPREF1058_RS05700 at 100.607 kb on + strand, within HMPREF1058_RS05700 at 100.607 kb on + strand, within HMPREF1058_RS05700 at 100.641 kb on + strand, within HMPREF1058_RS05700 at 100.652 kb on + strand, within HMPREF1058_RS05700 at 100.654 kb on + strand, within HMPREF1058_RS05700 at 100.674 kb on + strand at 100.674 kb on + strand, within HMPREF1058_RS05700 at 100.677 kb on + strand, within HMPREF1058_RS05700 at 100.754 kb on + strand, within HMPREF1058_RS05700 at 100.790 kb on + strand, within HMPREF1058_RS05700 at 100.846 kb on + strand, within HMPREF1058_RS05700 at 100.853 kb on + strand, within HMPREF1058_RS05700 at 100.853 kb on + strand, within HMPREF1058_RS05700 at 100.910 kb on + strand, within HMPREF1058_RS05700 at 100.923 kb on + strand, within HMPREF1058_RS05700 at 100.962 kb on + strand, within HMPREF1058_RS05700 at 101.105 kb on - strand at 101.144 kb on - strand at 101.152 kb on - strand, within HMPREF1058_RS0119830 at 101.346 kb on - strand at 101.352 kb on - strand at 101.367 kb on + strand at 101.372 kb on - strand at 101.420 kb on + strand at 101.420 kb on + strand at 101.454 kb on + strand at 101.529 kb on - strand at 101.601 kb on + strand, within HMPREF1058_RS21490 at 101.603 kb on + strand, within HMPREF1058_RS21490 at 101.606 kb on + strand, within HMPREF1058_RS21490 at 101.622 kb on + strand, within HMPREF1058_RS21490 at 101.623 kb on - strand, within HMPREF1058_RS21490 at 101.689 kb on + strand at 101.721 kb on - strand at 101.814 kb on + strand at 101.815 kb on - strand at 101.870 kb on + strand at 101.870 kb on + strand at 101.929 kb on + strand at 101.982 kb on + strand at 102.015 kb on - strand at 102.084 kb on - strand at 102.114 kb on - strand at 102.114 kb on - strand at 102.176 kb on + strand at 102.213 kb on + strand at 102.232 kb on - strand at 102.284 kb on + strand, within HMPREF1058_RS0119835 at 102.287 kb on - strand at 102.511 kb on - strand, within HMPREF1058_RS0119835 at 102.553 kb on + strand, within HMPREF1058_RS0119835 at 102.566 kb on + strand, within HMPREF1058_RS0119835 at 102.588 kb on - strand, within HMPREF1058_RS0119835 at 102.664 kb on - strand, within HMPREF1058_RS0119835 at 102.664 kb on - strand, within HMPREF1058_RS0119835
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 100,543 + HMPREF1058_RS05700 0.39 +1.9 100,572 + HMPREF1058_RS05700 0.43 -2.4 100,572 + HMPREF1058_RS05700 0.43 +0.7 100,607 + HMPREF1058_RS05700 0.46 -0.1 100,607 + HMPREF1058_RS05700 0.46 +0.1 100,641 + HMPREF1058_RS05700 0.50 -0.7 100,652 + HMPREF1058_RS05700 0.51 +1.3 100,654 + HMPREF1058_RS05700 0.52 -1.6 100,674 + -0.1 100,674 + HMPREF1058_RS05700 0.54 +0.5 100,677 + HMPREF1058_RS05700 0.54 -2.7 100,754 + HMPREF1058_RS05700 0.63 +0.3 100,790 + HMPREF1058_RS05700 0.67 -0.4 100,846 + HMPREF1058_RS05700 0.73 -0.2 100,853 + HMPREF1058_RS05700 0.74 +0.0 100,853 + HMPREF1058_RS05700 0.74 +2.8 100,910 + HMPREF1058_RS05700 0.80 -0.7 100,923 + HMPREF1058_RS05700 0.81 +0.6 100,962 + HMPREF1058_RS05700 0.86 -2.2 101,105 - -0.2 101,144 - +2.2 101,152 - HMPREF1058_RS0119830 0.10 +0.4 101,346 - -1.8 101,352 - -4.3 101,367 + -0.9 101,372 - +0.0 101,420 + -0.4 101,420 + -1.3 101,454 + -1.7 101,529 - +3.1 101,601 + HMPREF1058_RS21490 0.43 -1.0 101,603 + HMPREF1058_RS21490 0.44 -2.5 101,606 + HMPREF1058_RS21490 0.47 +0.1 101,622 + HMPREF1058_RS21490 0.58 -1.9 101,623 - HMPREF1058_RS21490 0.58 +2.9 101,689 + -0.3 101,721 - +1.0 101,814 + -0.5 101,815 - +0.5 101,870 + +0.9 101,870 + -0.4 101,929 + -0.4 101,982 + +1.7 102,015 - -0.4 102,084 - +3.5 102,114 - +1.9 102,114 - -0.6 102,176 + -2.1 102,213 + -0.8 102,232 - +3.4 102,284 + HMPREF1058_RS0119835 0.12 -1.9 102,287 - +0.1 102,511 - HMPREF1058_RS0119835 0.30 -1.4 102,553 + HMPREF1058_RS0119835 0.33 +0.8 102,566 + HMPREF1058_RS0119835 0.34 +1.3 102,588 - HMPREF1058_RS0119835 0.36 -0.9 102,664 - HMPREF1058_RS0119835 0.42 +0.7 102,664 - HMPREF1058_RS0119835 0.42 -1.3
Or see this region's nucleotide sequence