Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12960 and HMPREF1058_RS21440 are separated by 113 nucleotides HMPREF1058_RS21440 and HMPREF1058_RS0119555 are separated by 14 nucleotides
HMPREF1058_RS12960: HMPREF1058_RS12960 - class I mannose-6-phosphate isomerase, at 1,626,989 to 1,627,960
_RS12960
HMPREF1058_RS21440: HMPREF1058_RS21440 - hypothetical protein, at 1,628,074 to 1,628,232
_RS21440
HMPREF1058_RS0119555: HMPREF1058_RS0119555 - carboxypeptidase-like regulatory domain-containing protein, at 1,628,247 to 1,629,316
_RS0119555
Position (kb)
1628
1629 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1627.961 kb on - strand at 1627.961 kb on - strand at 1627.961 kb on - strand at 1627.977 kb on - strand at 1627.977 kb on - strand at 1628.038 kb on - strand at 1628.043 kb on + strand at 1628.050 kb on + strand at 1628.050 kb on + strand at 1628.050 kb on + strand at 1628.050 kb on + strand at 1628.073 kb on - strand at 1628.076 kb on - strand at 1628.076 kb on - strand at 1628.078 kb on + strand at 1628.078 kb on + strand at 1628.079 kb on - strand at 1628.079 kb on - strand at 1628.079 kb on - strand at 1628.088 kb on + strand at 1628.089 kb on - strand at 1628.089 kb on - strand at 1628.124 kb on + strand, within HMPREF1058_RS21440 at 1628.125 kb on - strand, within HMPREF1058_RS21440 at 1628.125 kb on - strand, within HMPREF1058_RS21440 at 1628.149 kb on - strand, within HMPREF1058_RS21440 at 1628.150 kb on + strand, within HMPREF1058_RS21440 at 1628.232 kb on + strand at 1628.234 kb on + strand at 1628.234 kb on + strand at 1628.234 kb on + strand at 1628.234 kb on + strand at 1628.234 kb on + strand at 1628.235 kb on - strand at 1628.235 kb on - strand at 1628.238 kb on + strand at 1628.278 kb on + strand at 1628.279 kb on - strand at 1628.286 kb on - strand at 1628.287 kb on + strand at 1628.288 kb on - strand at 1628.318 kb on - strand at 1628.400 kb on + strand, within HMPREF1058_RS0119555 at 1628.504 kb on + strand, within HMPREF1058_RS0119555 at 1628.505 kb on - strand, within HMPREF1058_RS0119555 at 1628.569 kb on + strand, within HMPREF1058_RS0119555 at 1628.603 kb on - strand, within HMPREF1058_RS0119555 at 1628.625 kb on - strand, within HMPREF1058_RS0119555 at 1628.686 kb on + strand, within HMPREF1058_RS0119555 at 1628.686 kb on + strand, within HMPREF1058_RS0119555 at 1628.710 kb on + strand, within HMPREF1058_RS0119555 at 1628.713 kb on + strand, within HMPREF1058_RS0119555 at 1628.714 kb on - strand, within HMPREF1058_RS0119555 at 1628.761 kb on + strand, within HMPREF1058_RS0119555 at 1628.765 kb on - strand, within HMPREF1058_RS0119555 at 1628.766 kb on + strand, within HMPREF1058_RS0119555 at 1628.766 kb on + strand, within HMPREF1058_RS0119555 at 1628.766 kb on + strand, within HMPREF1058_RS0119555 at 1628.766 kb on + strand, within HMPREF1058_RS0119555 at 1628.767 kb on - strand, within HMPREF1058_RS0119555 at 1628.779 kb on + strand, within HMPREF1058_RS0119555 at 1628.783 kb on - strand, within HMPREF1058_RS0119555 at 1628.805 kb on - strand, within HMPREF1058_RS0119555 at 1628.837 kb on - strand, within HMPREF1058_RS0119555 at 1628.872 kb on + strand, within HMPREF1058_RS0119555 at 1628.917 kb on + strand, within HMPREF1058_RS0119555 at 1628.944 kb on + strand, within HMPREF1058_RS0119555 at 1628.945 kb on - strand, within HMPREF1058_RS0119555 at 1628.948 kb on - strand, within HMPREF1058_RS0119555 at 1628.997 kb on - strand, within HMPREF1058_RS0119555 at 1629.053 kb on - strand, within HMPREF1058_RS0119555 at 1629.089 kb on + strand, within HMPREF1058_RS0119555 at 1629.090 kb on - strand, within HMPREF1058_RS0119555 at 1629.090 kb on - strand, within HMPREF1058_RS0119555 at 1629.095 kb on - strand, within HMPREF1058_RS0119555 at 1629.129 kb on + strand, within HMPREF1058_RS0119555 at 1629.152 kb on - strand, within HMPREF1058_RS0119555 at 1629.154 kb on + strand, within HMPREF1058_RS0119555 at 1629.155 kb on - strand, within HMPREF1058_RS0119555 at 1629.155 kb on - strand, within HMPREF1058_RS0119555 at 1629.164 kb on - strand, within HMPREF1058_RS0119555 at 1629.167 kb on + strand, within HMPREF1058_RS0119555 at 1629.176 kb on + strand, within HMPREF1058_RS0119555 at 1629.177 kb on - strand, within HMPREF1058_RS0119555
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 1,627,961 - -2.1 1,627,961 - +2.5 1,627,961 - -0.7 1,627,977 - -1.9 1,627,977 - -0.6 1,628,038 - -2.8 1,628,043 + +0.5 1,628,050 + -0.1 1,628,050 + -1.0 1,628,050 + -1.2 1,628,050 + +1.3 1,628,073 - -1.1 1,628,076 - -1.5 1,628,076 - +1.3 1,628,078 + -0.5 1,628,078 + -1.2 1,628,079 - -1.0 1,628,079 - -1.8 1,628,079 - +0.9 1,628,088 + -1.8 1,628,089 - +0.9 1,628,089 - +0.8 1,628,124 + HMPREF1058_RS21440 0.31 +0.0 1,628,125 - HMPREF1058_RS21440 0.32 -0.4 1,628,125 - HMPREF1058_RS21440 0.32 -1.0 1,628,149 - HMPREF1058_RS21440 0.47 -2.4 1,628,150 + HMPREF1058_RS21440 0.48 -3.0 1,628,232 + -0.8 1,628,234 + +0.5 1,628,234 + +0.1 1,628,234 + -0.7 1,628,234 + +0.9 1,628,234 + +2.2 1,628,235 - +0.1 1,628,235 - +0.3 1,628,238 + +2.5 1,628,278 + -0.6 1,628,279 - +2.4 1,628,286 - -0.7 1,628,287 + +1.3 1,628,288 - +1.6 1,628,318 - +1.8 1,628,400 + HMPREF1058_RS0119555 0.14 +1.3 1,628,504 + HMPREF1058_RS0119555 0.24 +2.0 1,628,505 - HMPREF1058_RS0119555 0.24 +0.7 1,628,569 + HMPREF1058_RS0119555 0.30 +0.2 1,628,603 - HMPREF1058_RS0119555 0.33 -0.3 1,628,625 - HMPREF1058_RS0119555 0.35 +1.5 1,628,686 + HMPREF1058_RS0119555 0.41 -0.6 1,628,686 + HMPREF1058_RS0119555 0.41 -0.5 1,628,710 + HMPREF1058_RS0119555 0.43 +1.0 1,628,713 + HMPREF1058_RS0119555 0.44 -2.0 1,628,714 - HMPREF1058_RS0119555 0.44 +0.1 1,628,761 + HMPREF1058_RS0119555 0.48 -0.0 1,628,765 - HMPREF1058_RS0119555 0.48 +0.8 1,628,766 + HMPREF1058_RS0119555 0.49 -0.5 1,628,766 + HMPREF1058_RS0119555 0.49 -1.1 1,628,766 + HMPREF1058_RS0119555 0.49 -0.8 1,628,766 + HMPREF1058_RS0119555 0.49 -2.0 1,628,767 - HMPREF1058_RS0119555 0.49 -0.7 1,628,779 + HMPREF1058_RS0119555 0.50 -2.2 1,628,783 - HMPREF1058_RS0119555 0.50 +0.4 1,628,805 - HMPREF1058_RS0119555 0.52 -2.0 1,628,837 - HMPREF1058_RS0119555 0.55 +0.4 1,628,872 + HMPREF1058_RS0119555 0.58 +1.9 1,628,917 + HMPREF1058_RS0119555 0.63 +0.2 1,628,944 + HMPREF1058_RS0119555 0.65 -0.3 1,628,945 - HMPREF1058_RS0119555 0.65 -0.5 1,628,948 - HMPREF1058_RS0119555 0.66 +1.0 1,628,997 - HMPREF1058_RS0119555 0.70 +0.2 1,629,053 - HMPREF1058_RS0119555 0.75 -0.1 1,629,089 + HMPREF1058_RS0119555 0.79 -1.1 1,629,090 - HMPREF1058_RS0119555 0.79 -2.0 1,629,090 - HMPREF1058_RS0119555 0.79 -1.9 1,629,095 - HMPREF1058_RS0119555 0.79 -0.4 1,629,129 + HMPREF1058_RS0119555 0.82 -0.4 1,629,152 - HMPREF1058_RS0119555 0.85 +2.6 1,629,154 + HMPREF1058_RS0119555 0.85 -0.4 1,629,155 - HMPREF1058_RS0119555 0.85 +0.5 1,629,155 - HMPREF1058_RS0119555 0.85 -0.1 1,629,164 - HMPREF1058_RS0119555 0.86 +0.4 1,629,167 + HMPREF1058_RS0119555 0.86 -1.7 1,629,176 + HMPREF1058_RS0119555 0.87 -0.2 1,629,177 - HMPREF1058_RS0119555 0.87 +0.7
Or see this region's nucleotide sequence