Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21440

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,627,961	-				-2.1
1,627,961	-				+2.5
1,627,961	-				-0.7
1,627,977	-				-1.9
1,627,977	-				-0.6
1,628,038	-				-2.8
1,628,043	+				+0.5
1,628,050	+				-0.1
1,628,050	+				-1.0
1,628,050	+				-1.2
1,628,050	+				+1.3
1,628,073	-				-1.1
1,628,076	-				-1.5
1,628,076	-				+1.3
1,628,078	+				-0.5
1,628,078	+				-1.2
1,628,079	-				-1.0
1,628,079	-				-1.8
1,628,079	-				+0.9
1,628,088	+				-1.8
1,628,089	-				+0.9
1,628,089	-				+0.8
1,628,124	+		HMPREF1058_RS21440	0.31	+0.0
1,628,125	-		HMPREF1058_RS21440	0.32	-0.4
1,628,125	-		HMPREF1058_RS21440	0.32	-1.0
1,628,149	-		HMPREF1058_RS21440	0.47	-2.4
1,628,150	+		HMPREF1058_RS21440	0.48	-3.0
1,628,232	+				-0.8
1,628,234	+				+0.5
1,628,234	+				+0.1
1,628,234	+				-0.7
1,628,234	+				+0.9
1,628,234	+				+2.2
1,628,235	-				+0.1
1,628,235	-				+0.3
1,628,238	+				+2.5
1,628,278	+				-0.6
1,628,279	-				+2.4
1,628,286	-				-0.7
1,628,287	+				+1.3
1,628,288	-				+1.6
1,628,318	-				+1.8
1,628,400	+		HMPREF1058_RS0119555	0.14	+1.3
1,628,504	+		HMPREF1058_RS0119555	0.24	+2.0
1,628,505	-		HMPREF1058_RS0119555	0.24	+0.7
1,628,569	+		HMPREF1058_RS0119555	0.30	+0.2
1,628,603	-		HMPREF1058_RS0119555	0.33	-0.3
1,628,625	-		HMPREF1058_RS0119555	0.35	+1.5
1,628,686	+		HMPREF1058_RS0119555	0.41	-0.6
1,628,686	+		HMPREF1058_RS0119555	0.41	-0.5
1,628,710	+		HMPREF1058_RS0119555	0.43	+1.0
1,628,713	+		HMPREF1058_RS0119555	0.44	-2.0
1,628,714	-		HMPREF1058_RS0119555	0.44	+0.1
1,628,761	+		HMPREF1058_RS0119555	0.48	-0.0
1,628,765	-		HMPREF1058_RS0119555	0.48	+0.8
1,628,766	+		HMPREF1058_RS0119555	0.49	-0.5
1,628,766	+		HMPREF1058_RS0119555	0.49	-1.1
1,628,766	+		HMPREF1058_RS0119555	0.49	-0.8
1,628,766	+		HMPREF1058_RS0119555	0.49	-2.0
1,628,767	-		HMPREF1058_RS0119555	0.49	-0.7
1,628,779	+		HMPREF1058_RS0119555	0.50	-2.2
1,628,783	-		HMPREF1058_RS0119555	0.50	+0.4
1,628,805	-		HMPREF1058_RS0119555	0.52	-2.0
1,628,837	-		HMPREF1058_RS0119555	0.55	+0.4
1,628,872	+		HMPREF1058_RS0119555	0.58	+1.9
1,628,917	+		HMPREF1058_RS0119555	0.63	+0.2
1,628,944	+		HMPREF1058_RS0119555	0.65	-0.3
1,628,945	-		HMPREF1058_RS0119555	0.65	-0.5
1,628,948	-		HMPREF1058_RS0119555	0.66	+1.0
1,628,997	-		HMPREF1058_RS0119555	0.70	+0.2
1,629,053	-		HMPREF1058_RS0119555	0.75	-0.1
1,629,089	+		HMPREF1058_RS0119555	0.79	-1.1
1,629,090	-		HMPREF1058_RS0119555	0.79	-2.0
1,629,090	-		HMPREF1058_RS0119555	0.79	-1.9
1,629,095	-		HMPREF1058_RS0119555	0.79	-0.4
1,629,129	+		HMPREF1058_RS0119555	0.82	-0.4
1,629,152	-		HMPREF1058_RS0119555	0.85	+2.6
1,629,154	+		HMPREF1058_RS0119555	0.85	-0.4
1,629,155	-		HMPREF1058_RS0119555	0.85	+0.5
1,629,155	-		HMPREF1058_RS0119555	0.85	-0.1
1,629,164	-		HMPREF1058_RS0119555	0.86	+0.4
1,629,167	+		HMPREF1058_RS0119555	0.86	-1.7
1,629,176	+		HMPREF1058_RS0119555	0.87	-0.2
1,629,177	-		HMPREF1058_RS0119555	0.87	+0.7